Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) AT4G13920 282 / 3e-81 AtRLP50 receptor like protein 50 (.1) AT2G25470 259 / 9e-73 AtRLP21 receptor like protein 21 (.1) AT2G15080 258 / 3e-72 AtRLP19 receptor like protein 19 (.1.2) AT3G05660 252 / 8e-71 AtRLP33 receptor like protein 33 (.1) AT3G11010 252 / 1e-70 AtRLP34 receptor like protein 34 (.1) AT2G32680 247 / 7e-69 AtRLP23 receptor like protein 23 (.1) AT1G71400 243 / 8e-68 AtRLP12 receptor like protein 12 (.1) AT5G27060 244 / 1e-67 AtRLP53 receptor like protein 53 (.1) AT3G11080 244 / 2e-67 AtRLP35 receptor like protein 35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G025800 [exp] 1365 / 0 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 1362 / 0 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 1358 / 0 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 848 / 0 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 823 / 0 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 778 / 0 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 765 / 0 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 716 / 0 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.001G043800 [exp] 588 / 0 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002743 [exp] 496 / 5e-160 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 494 / 2e-158 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 492 / 2e-158 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 491 / 9e-158 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 489 / 2e-157 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 488 / 7e-157 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 484 / 4e-155 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 482 / 2e-154 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 480 / 3e-154 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 477 / 2e-152 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G034600.6 pacid=42782771 polypeptide=Potri.012G034600.6.p locus=Potri.012G034600 ID=Potri.012G034600.6.v4.1 annot-version=v4.1 ATGCACAAAAAATATGTTCCACTTATTGTGCTTGTATTGTTGCACATAAACCCTCTTCCTGAATTCATTACAGGGGTAAGAGGTGCAAAGTTTAGGTGCA TAGAGAGGGAGAGACGAGCACTTCTTCAGTTCAAAGAAGACCTTATTGATGATTATGGTGTTCTTTCTTCTTGGGGGGGCAAAGAAGAGAAAAGAGATTG CTGCAAATGGATAGGAGTTGGCTGTGACAACATAACTGGTCATGTTACTTTGCTTGATCTCCATTCCTCACCTGTGTACGAGGATCGTTTTACGCCTCTA ATAGGTAAGGTTAGTGATTCATTACTTGAGTTACAGTATTTGAATTACTTGGACCTGAGTTTGAATAATTTTGATGAGAGTATAATGGATTTTATTGGCT CCTTAACCAGCCTGAGATACTTGAACCTCTCATACAACTTTTTCACTGTAACTATTCCCTATCAGCTTGGGAACCTCTCAAGATTGCAATCTCTTGACCT CAGCTATAGTTTTGATGGCAGTGTAGAAAATCTTGACTGGCTTTCTCATCTTTCTTCTCTAGAGCGTCTTTATTTAAGTGGTTCCAACCTCAGTAAGGTA AATGACTGGCTGCAAGTGATTACAAACCTCCCGCACCTAAAAGAACTGCGATTGAATCAGTGTAGTCTTCCAGATATAATTCCTTCACCTCCTTTTGTCA ACTCTTCTAAATTTCTTGCTGTCCTTCATCTCTCTAATAACAATCTTTCTTCTGCGATATACCCCTGGCTGTACAACTTTAATAAAAGCCTGGTTGACCT TGACCTTTCTGGTAACCAGTTAAAAGGTTCGATTCCAGATGCATTCAGAAACATGAGTGCTCTCACAAAACTTGTTCTTTCCAGTAATCAGCTTGAAGGT GGCATTCCAAGATCTCTTGGGGAGATGTGCAGCTTGCATGTGCTAGATTTGTGCCACAACCATATCAGTGAGGACCTTTCGGATCTCGTGCAGAACTTAT ATGGACGCACAGAGAGCTCACTGGAGATTTTGAGATTATGTCAGAATCAACTTAATGGTCCATTGCCTGATATTGCTAGATTTTCTTCCTTGAGAGAATT GGATATCTCATATAATCGACTCAATGGGTGTATACCTGAAAGTATTGGATTCCTTTCCAAGCTTGAGCATTTTGATGTTTCTTTTAATTCTTTTCAAGGT GTGGTGTCTGGAGAACATTTTTCTAACCTCTCCAAGTTACAGAACTTGGATTTGTCTTACAATTCCTTGGTTTTGAGATTCAAATCTGAGTGGGACCCCA CTTTTCAATTGAACACCATTCGTCTTAGTTCATGCAACTTGGGGCCTTTTTTCCCACAATGGCTTCAAACTCAGAGAAATGTCCATTTGCTTGATATCTC CAGTGCTAATATTTCAGATAAAATCCCTAATTGGTTTTGGAACCTGTTGCCTACCTTGGCTTTCTTAAATCTATCTCACAACTTGATGAGTGGAACGCTG CCAGATTTATTGTCAGTTGATGTGGTTGATGGTACATTCCCTGGGTTTGATTTGAGTTTTAATCAGTTTGAGGGTCTACTGCCAGCTTTTCCTTCTACGA CATCCTCATTGATTCTTTCTAACAATTTATTTTCAGGGCCAATTTCTTACATATGCAATATTGCTGGTGAGGTATTGAGCTTCCTTGATCTGTCAAACAA TCTGTTGTCTGGACAACTTCCAAATTGTTTCATGGATTGGAAGGGACTGGTTGTTCTGAATTTGGCTAACAACAACTTGTCAGGCAAAATTCCAAGCTCT GTCGGATCATTGTTTCTCCTTCAAACATTGAGTTTACACAACAATAAACTCTACGGAGAATTGCCCGTGTCTTTAAAAAACTGTAGCATGTTGAAATTTT TGGACCTTGGTGAAAATCGATTATCCGGAGAAATACCAGCTTGGATAGGAGAAAGCCTCTCATCTTTGATGTTCCTTTCCCTTCAATCTAATGAATTCAT TGGAAGCATCCCGCCACATATTTGTCAGCTAAGAAATATTAGGATCTTGGACCTCTCCCTAAACAATATCACTGGAGCCATACCAGAGTGTCTCAACAAT CTAACTGCTATGGTTCTAAGAGGGGAAGCAGAAACTGTCATTGACAATCTTTACTTGACAAAGAGACGTGGAGCAGTTTTTTCTGGAGGCTACTATATCA ATAAGGCATGGGTTGGATGGAAAGGAAGAGATTATGAATTTGAGAGAAATCTTGGACTGTTGCGTGTCATTGATTTTTCAGGCAACAATTTATCTGGAGA AATTCCAGAGGAAATAACTGGCCTGCTTGAGTTGGTTGCACTGAACTTGTCAGGAAATAATTTAACTGGAGTAATCCCTCAAAAGATTGATCATTTGAAA TTGTTAGAATCTCTTGATTTGTCAAGAAATCATTTCTATGGTGCAATTCCACTCACAATGGCTGCTCTAAATTTTTTAAGTTGCTTGAATGTCTCCTGCA ATAATTTGTCTGGGAAAATTCCATCGAGCACTCAGCTTCAAAGCTTTGATGCATCAGCTTTTACAGGCAATCCTGCACTGTGTGGTCTACCAGTCACCCA GAAATGCCTTGGAGATGTTGATGTGCCTCAAAGTCCAGCGATGAATGATGTAATCCAAGACAATCAAAAAACTGTGCATGAGTTCAGTATGTGGTTTTAT ATTGGCATGGAAAATGGTTTTTTTGTATTTTTTATTGGATTTTCGGGTGCATTACTGCTCAAGCATTCTTGGAGACATGGCTATTTCCAGTTTTTGGATG AATCATTGGAATTCCTCTGCTTGATACTGAGAGCGCATAGGGCAAAACAAAAAAGGCTACACCCAAACTCTTGCAGTTAG
AA sequence Show only first row Show all	>Potri.012G034600.6 pacid=42782771 polypeptide=Potri.012G034600.6.p locus=Potri.012G034600 ID=Potri.012G034600.6.v4.1 annot-version=v4.1 MHKKYVPLIVLVLLHINPLPEFITGVRGAKFRCIERERRALLQFKEDLIDDYGVLSSWGGKEEKRDCCKWIGVGCDNITGHVTLLDLHSSPVYEDRFTPL IGKVSDSLLELQYLNYLDLSLNNFDESIMDFIGSLTSLRYLNLSYNFFTVTIPYQLGNLSRLQSLDLSYSFDGSVENLDWLSHLSSLERLYLSGSNLSKV NDWLQVITNLPHLKELRLNQCSLPDIIPSPPFVNSSKFLAVLHLSNNNLSSAIYPWLYNFNKSLVDLDLSGNQLKGSIPDAFRNMSALTKLVLSSNQLEG GIPRSLGEMCSLHVLDLCHNHISEDLSDLVQNLYGRTESSLEILRLCQNQLNGPLPDIARFSSLRELDISYNRLNGCIPESIGFLSKLEHFDVSFNSFQG VVSGEHFSNLSKLQNLDLSYNSLVLRFKSEWDPTFQLNTIRLSSCNLGPFFPQWLQTQRNVHLLDISSANISDKIPNWFWNLLPTLAFLNLSHNLMSGTL PDLLSVDVVDGTFPGFDLSFNQFEGLLPAFPSTTSSLILSNNLFSGPISYICNIAGEVLSFLDLSNNLLSGQLPNCFMDWKGLVVLNLANNNLSGKIPSS VGSLFLLQTLSLHNNKLYGELPVSLKNCSMLKFLDLGENRLSGEIPAWIGESLSSLMFLSLQSNEFIGSIPPHICQLRNIRILDLSLNNITGAIPECLNN LTAMVLRGEAETVIDNLYLTKRRGAVFSGGYYINKAWVGWKGRDYEFERNLGLLRVIDFSGNNLSGEIPEEITGLLELVALNLSGNNLTGVIPQKIDHLK LLESLDLSRNHFYGAIPLTMAALNFLSCLNVSCNNLSGKIPSSTQLQSFDASAFTGNPALCGLPVTQKCLGDVDVPQSPAMNDVIQDNQKTVHEFSMWFY IGMENGFFVFFIGFSGALLLKHSWRHGYFQFLDESLEFLCLILRAHRAKQKRLHPNSCS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34930			disease resistance family prot...		Potri.012G034600 [exp]	0	1
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.010G183832 [exp]	6.00	0.8260
AT3G22520			unknown protein		Potri.010G086700 [exp]	6.32	0.8146
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.002G221600 [exp]	7.87	0.8365
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Potri.004G196800 [exp]	8.77	0.8239
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Potri.010G040600 [exp]	10.09	0.8343
AT4G27190			NB-ARC domain-containing disea...		Potri.001G426200 [exp]	14.42	0.8224
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.019G075900 [exp]	15.42	0.8091
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	16.06	0.8361
AT1G78100		AUF1	auxin up-regulated f-box prote...		Potri.001G021500 [exp]	16.61	0.8118
AT5G17910			unknown protein		Potri.019G044500 [exp]	16.61	0.8259

Compare expression of checked genes

Potri.012G034600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.