Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24080 520 / 0 Protein kinase superfamily protein (.1) AT4G32300 302 / 6e-93 SD2-5 S-domain-2 5 (.1) AT2G19130 290 / 2e-88 S-locus lectin protein kinase family protein (.1) AT1G34300 287 / 2e-87 lectin protein kinase family protein (.1) AT5G35370 278 / 2e-83 S-locus lectin protein kinase family protein (.1) AT4G00340 255 / 2e-75 RLK4 receptor-like protein kinase 4 (.1) AT5G60900 244 / 6e-72 RLK1 receptor-like protein kinase 1 (.1) AT5G20050 225 / 2e-67 Protein kinase superfamily protein (.1) AT1G16670 208 / 1e-61 Protein kinase superfamily protein (.1) AT3G18810 213 / 6e-61 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G026300 [exp] 982 / 0 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.006G254600 [exp] 324 / 2e-101 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.018G027300 [exp] 315 / 5e-98 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.013G115700 [exp] 306 / 2e-94 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G086300 [exp] 306 / 3e-94 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.013G115800 [exp] 305 / 5e-94 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.019G086200 [exp] 305 / 6e-94 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.019G119200 [exp] 305 / 6e-94 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G149500 [exp] 304 / 1e-93 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039315 [exp] 794 / 0 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10002917 [exp] 308 / 5e-95 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 303 / 4e-93 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10033748 [exp] 298 / 1e-91 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006052 [exp] 292 / 4e-89 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10043391 [exp] 290 / 1e-88 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10042266 [exp] 283 / 3e-86 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 282 / 3e-85 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10028711 [exp] 275 / 6e-85 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10013252 [exp] 279 / 2e-84 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.012G034901.2 pacid=42782524 polypeptide=Potri.012G034901.2.p locus=Potri.012G034901 ID=Potri.012G034901.2.v4.1 annot-version=v4.1 ATGAACTTGCCTGAAACCTATGATGCTGCACCTGAAGCTTATGCCAACTATTCCTACTGGCCTGGGCCGGACATTTTGAATGTTACGGGGGATGTGGTTG CGGTTTTAGATGAAGCAGGAAGCTTTGGAATTGTGTATGGTGAATCATCAAATGGAGCAGTTTATGTGTATAAAAATGATGGTGACTATAATGGATTAGG TTTAGCTTCAAGTCAATCAAGTACTCGGTTATCAATTCTTCGAAGACTAATACTTAAGACAAACGGAAATTTGAGATTGTATAGATGGGATAACGATGTT AATGGTTCACGGCAGTGGGTTCCAGAGTGGGCTGCAGTGTCAAACCCTTATGAGATTGCTGGAATATGTGGTAATGGGGTGTGTAATTTGGATAGAAGCA AGACTATTGCTTCTTGTTCATGCTTGCCTGGTACTTTCAAGGCAGGAGGCGATAACTTCTGCTCGGAGAACTCATCGTTGATTGGAAGATGTGATTCGAG AAACGCAAATCAGACATCTGAGTTCAAGATTGCAGCAGTGCAGCAAACAAATTACTATTTCTCCGATTTTTCGGTGATTGCAAACTACAGTGACATTCCT ACAGTGTCAAAGTGTGGTGATGCTTGCCTATCAGATTGTCAGTGTGTGGCTTCTGTTTATGGGCTTGATGATGAGAATCCTTATTGCTGGATACTGAGGA GCTTAGACTTTGGCGGATATGAGGACCCTGGATCCACCTTGTTTGTGAAGGTTAGAGCGAATGAATCGATGACTCTAGGAGGCAATAAAAGTGGGTCTGA TAATGGTGATACAAAAAGGAAGGTTTTGGTTGTACCTATAGTTCTCAGCATGACATTTCTTGTTGTCCTCCTATGCCTATTACTGTATCACAATGTTCAC AAAAAGAGATCCTTGAAAAGAGCTATGGAAAGCTCTCCTATTCTTCCTGGCGCTCCAATACATTTTACTTACCGAGACTTGCAAGTTCGTACCTGTAATT TTTCACAGCTACTCGGAACAGGAGGATTTGGGAGTGTATACAAAGGAAGCCTTGGAGATGGAACTTTGGTTGCTGTAAAGAAACTAGACAAGGTTTTGCC TCATGGGGAGAGAGAATTTATAACTGAAGTGAACACCATAGGCTCTATGCACCACATGAACTTGGTTCGTCTTTGCGGGTACTGCTCCGAGGGATCGCAT TGTCTCCTAGTTTATGAGTTTCTGAAAAATGGGTCATTGGACAGATGGATCTTTCCATCATATAGTTTCCGAGACAGACTGCTGGATTGGTCAACGCGAT TCGATATAGCCATAGCTACTGCACAAGGGATTGCATACTTTCACGAACAGTGCAGGAACCGGATAATTCATTGCAATATCAAGCCAGAGAACATTTTGTT AGATGAGAATTTCTGTCCTAAAGTATCAGATTTTGGACTAGCTAAGTTTATGGGAAGAGAGCATTCACATGTTGTTACCATGGTTCGAGGAACAAGAGGG TATTTGGCTCCAGAATGGATTAGCAACAGGCCGATTACTGTAAAGGCTGATGTTTATAGTTATGGCATGCTTCTTTTGGAGATTGTTGGTGGCAGGAGAA ACCTCGACATGTCTTTTGATGCAGAGGACTTCTTTTACCCTGGGCGATGA
AA sequence Show only first row Show all	>Potri.012G034901.2 pacid=42782524 polypeptide=Potri.012G034901.2.p locus=Potri.012G034901 ID=Potri.012G034901.2.v4.1 annot-version=v4.1 MNLPETYDAAPEAYANYSYWPGPDILNVTGDVVAVLDEAGSFGIVYGESSNGAVYVYKNDGDYNGLGLASSQSSTRLSILRRLILKTNGNLRLYRWDNDV NGSRQWVPEWAAVSNPYEIAGICGNGVCNLDRSKTIASCSCLPGTFKAGGDNFCSENSSLIGRCDSRNANQTSEFKIAAVQQTNYYFSDFSVIANYSDIP TVSKCGDACLSDCQCVASVYGLDDENPYCWILRSLDFGGYEDPGSTLFVKVRANESMTLGGNKSGSDNGDTKRKVLVVPIVLSMTFLVVLLCLLLYHNVH KKRSLKRAMESSPILPGAPIHFTYRDLQVRTCNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDKVLPHGEREFITEVNTIGSMHHMNLVRLCGYCSEGSH CLLVYEFLKNGSLDRWIFPSYSFRDRLLDWSTRFDIAIATAQGIAYFHEQCRNRIIHCNIKPENILLDENFCPKVSDFGLAKFMGREHSHVVTMVRGTRG YLAPEWISNRPITVKADVYSYGMLLLEIVGGRRNLDMSFDAEDFFYPGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24080			Protein kinase superfamily pro...		Potri.012G034901 [exp]	0	1
AT1G07900	AS2	LBD1	LOB domain-containing protein ...		Potri.008G043900 [exp]	1.00	0.9349
AT5G15720		GLIP7	GDSL-motif lipase 7 (.1)		Potri.004G112700 [exp]	2.00	0.8928
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.004G033100 [exp]	6.24	0.8989	MYB.53
AT5G05340			Peroxidase superfamily protein...		Potri.013G083600 [exp]	7.93	0.8761
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.009G081400 [exp]	8.36	0.8570
AT5G52300		LTI65, RD29B	RESPONSIVE TO DESSICATION 29B,...		Potri.012G141300 [exp]	10.39	0.8615
AT2G42560			late embryogenesis abundant do...		Potri.013G118600 [exp]	11.74	0.8875
AT2G36640		ATECP63	embryonic cell protein 63 (.1)		Potri.015G060600 [exp]	12.48	0.8369	ATECP63.1
AT4G18170	WRKY	ATWRKY28, WRKY2...	WRKY DNA-binding protein 28 (....		Potri.005G203200 [exp]	12.96	0.8438
					Potri.010G134450 [exp]	14.69	0.8636

Compare expression of checked genes

Potri.012G034901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.