Plant FIBer expression Database

Potri.012G035300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G24030 174 / 4e-51 SLAH3 SLAC1 homologue 3 (.1)
AT4G27970 151 / 2e-43 SLAH2 SLAC1 homologue 2 (.1)
AT1G12480 103 / 8e-26 SLAC1, RCD3, CDI3, OZS1 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1)
AT1G62280 62 / 1e-11 SLAH1 SLAC1 homologue 1 (.1)
AT1G62262 60 / 1e-10 SLAH4 SLAC1 homologue 4 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G026700
[exp]
239 / 2e-80 AT5G24030 367 / 3e-124 SLAC1 homologue 3 (.1)
Potri.001G114300
[exp]
60 / 1e-10 AT1G12480 432 / 4e-149 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027553
[exp]
199 / 1e-60 AT5G24030 669 / 0.0 SLAC1 homologue 3 (.1)
Lus10039312
[exp]
199 / 1e-60 AT5G24030 670 / 0.0 SLAC1 homologue 3 (.1)
Lus10006678
[exp]
110 / 3e-28 AT1G12480 734 / 0.0 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1)
Lus10007023
[exp]
108 / 2e-27 AT1G12480 720 / 0.0 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1)
Lus10024306
[exp]
61 / 6e-11 AT1G62280 349 / 7e-119 SLAC1 homologue 1 (.1)
Lus10031545
[exp]
42 / 6e-05 AT1G62280 160 / 3e-48 SLAC1 homologue 1 (.1)
Lus10015133
[exp]
42 / 0.0002 AT1G62280 387 / 6e-133 SLAC1 homologue 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03595 SLAC1 Voltage-dependent anion channel
Representative CDS sequence
>Potri.012G035300.1 pacid=42784324 polypeptide=Potri.012G035300.1.p locus=Potri.012G035300 ID=Potri.012G035300.1.v4.1 annot-version=v4.1
ATGGCATGGGCAAAAATTCAAGGCTCATTTGATCATGGATCACGGATAGCTTACTTCATTGCCTTGTTCCTTTATTTCTCACTGGCAGTCCGTGCGAATT
GTTTCCGAGGATTCAAGTTTTCATTGTCATCGTGGGCATACACTTTCCCTCTGACGGGCGCTGCCATTTCAACAATCAGGTACTCAGATGAAGTCACGAA
TGTAGTCACTCAAGTTCTTGCTGTCATACTCTCTGCCGTTTCCACACTCACAGTATCGGGTCTGCTGGTATCGTCAATAGTGCATGCATTCGTGCTTCGG
GACCTCTTCCCTAATGACCTTGTCATCGCTATCAGCAACAGCAAACCAAGACAGCATCATCACAGGAAGTGGTTCCATATACGACGAGGAAGCTCGGATG
AAAAAGAGATTGAACATTACTTAAAGTTCAGTGACTCAGATGTCAAGGATATAGAATCTTCTCTAGACCCAACCACTTCCAGCTCATTAAGTAATGCCCA
TCACAATGAAGCTTATGCTTCCACATCCTTAGCAGGTCCTAGCCATTTTGTGGATCTTCAGCCCAGTCATGCGAGGAAATCATAA
AA sequence
>Potri.012G035300.1 pacid=42784324 polypeptide=Potri.012G035300.1.p locus=Potri.012G035300 ID=Potri.012G035300.1.v4.1 annot-version=v4.1
MAWAKIQGSFDHGSRIAYFIALFLYFSLAVRANCFRGFKFSLSSWAYTFPLTGAAISTIRYSDEVTNVVTQVLAVILSAVSTLTVSGLLVSSIVHAFVLR
DLFPNDLVIAISNSKPRQHHHRKWFHIRRGSSDEKEIEHYLKFSDSDVKDIESSLDPTTSSSLSNAHHNEAYASTSLAGPSHFVDLQPSHARKS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G24030 SLAH3 SLAC1 homologue 3 (.1) Potri.012G035300
[exp]
0 1
AT1G79800 AtENODL7 early nodulin-like protein 7 (... Potri.003G050500
[exp]
26.09 0.8634
AT3G02310 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K... Potri.004G115500
[exp]
72.66 0.8601
AT1G15460 ATBOR4 ARABIDOPSIS THALIANA REQUIRES ... Potri.006G249800
[exp]
84.42 0.8601
AT1G02790 PGA4 polygalacturonase 4 (.1) Potri.010G011200
[exp]
98.83 0.8601
AT2G38300 GARP myb-like HTH transcriptional r... Potri.011G067150
[exp]
104.03 0.8601
AT3G61690 nucleotidyltransferases (.1) Potri.011G116501
[exp]
105.29 0.8601
AT2G24370 Protein kinase protein with ad... Potri.018G002400
[exp]
120.49 0.8601
Potri.001G169351
[exp]
127.93 0.8601
Potri.001G196900
[exp]
128.96 0.8601
Potri.001G276804
[exp]
129.98 0.8601

Potri.012G035300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.