Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52882 1137 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G28000 1134 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 1105 / 0 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G02890 506 / 8e-163 AAA-type ATPase family protein (.1.2) AT4G02480 483 / 5e-154 AAA-type ATPase family protein (.1) AT4G24860 444 / 1e-140 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G62130 421 / 1e-132 AAA-type ATPase family protein (.1) AT3G19740 384 / 6e-119 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 368 / 2e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G27680 273 / 1e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G026900 [exp] 1412 / 0 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G097600 [exp] 1141 / 0 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G133700 [exp] 1118 / 0 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.012G096300 [exp] 496 / 7e-159 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.014G131000 [exp] 492 / 8e-158 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G205900 [exp] 482 / 5e-154 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.015G094100 [exp] 482 / 1e-153 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.007G069800 [exp] 355 / 4e-108 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G093300 [exp] 354 / 8e-108 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027551 [exp] 1164 / 0 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10039309 [exp] 1161 / 0 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024692 [exp] 1084 / 0 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10028752 [exp] 1058 / 0 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10017535 [exp] 1053 / 0 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10010282 [exp] 464 / 3e-147 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10036347 [exp] 460 / 2e-145 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10010204 [exp] 389 / 5e-121 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 380 / 4e-117 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013429 [exp] 358 / 1e-108 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.012G035400.2 pacid=42784080 polypeptide=Potri.012G035400.2.p locus=Potri.012G035400 ID=Potri.012G035400.2.v4.1 annot-version=v4.1 ATGGAACAGAAGCATATGTTGTTGTCTGCTTTGAGTGTTGGCGTCGGGGTCGGTATGGGGCTAGGATTGGCATCTGGACAAAAAGTGAGTAGGTGGGCTG GTGGAAATGGTTCAATAGATGGTGTCACGGTTGAGCAGATTGAGCAAGAGTTGATGAGGCAGGTTCTTGATGGAAGAGAGAGCGAGGTCACATTTGATGA GTTCCCTTACTATCTCAGTGAGAAAATCCGGATGCTATTAACAAGTGCGGCATTTGTTCATTTAAAGCATGCTGACTTCTCCAAGCACACCCGGAACCTT TCTCCCGCCAGTAGAACAATTTTGCTCTCAGGACCTGCTGAGTTTTATCACCAAATGCTTGCAAAGGCTTTAGCACATAACTTTGAATCAAAGTTGCTGT TGTTGGATGTTCATGACTTTTCCATAAAGATGCAAAGCAAATATGGATGCATTAAAAAAGAACCCTCTTTCACAAGTTCCATTTCCGGGTTCACTTTGGA ACGAATGTCCTCTTTGTTTGGTTCTTTCTCAATCCTTTCTACAAAGGAAGAAACAAGGGGTATGGAAGGGTCAAACAATCCTCCCAAACTTCGCAGAAAT GCCTCCACTGCATCTGATATGAGTAGTATTTCTTCACAATCCGCTTCTACAAATCCAGCTCCTCTCAAGCACTCCAGCAGTTGGTGTTTTGATGAGAAAC TCTTTCTGCAATCACTTTATCAGGTGTTGGCTTCAGTATCGGAGAGAAATTCCATCATTTTATACCTTAGGGATGCCGAGAAGATTCTTCTTCAATCACA AAGGATGTACACCTTGTTTGAAAAAATGTTGAAGAAGCTCTCAGGTAATGTGTTGATACTTGGTTCCCGGATGTTGGACCAAGAAGATGATTGCAGAGAA GTGGATGAGAGGCTAGCTCTGTTATTCCCATACAACATTGAGATCAAACCACCAGAAGATGAGACCCACCTTGTCAGCTGGAAAGCCCAACTGGAAGAGG ACATGAAGAAGATTCAGATTCAAGATACCAAAAACCACATTGCAGAGGTGCTTGCAGCAAATGATATCGAATGCGATGATTTTAGTTCTATTTGCCATGC AGACACAATGGTTCTTAGCAACTATATTGAAGAAATTGTAGTATCAGCAATATCCTATCATCTGATGAATAATAAGGATCCAGAATACCGAAATGGAAAG CTTGTTATATCATCTAAGAGCTTGTCACATGGATTGAGTATATTCCAAGAAGGTAAAAGTGATGGGAAAGATACTTTAAAACTAGAGACTAATGCCGAAG CTGGCAAGGAAACTGAAGGGGAAGAGGCTGTTGGTGCCAAGAATGATATTAAAAGTGAAACAGAAAAATCTGTAACTGGAGCCAAGAAGGACAGCGAGAA TCAGCCTAAAACCCCTGAAGTACCTCCTGACAATGAATTTGAGAAACGAATCAGACCAGAGGTTATCCCCGCAAATGAGATTGGAGTAACATTTGCAGAT ATTGGTGCCTTGGATGAAACCAAAGAATCACTCCAGGAGCTTGTCATGCTGCCTCTTCGGAGGCCGGATCTCTTCAATGGTGGGCTTCTCAAGCCCTGTA GAGGTATATTGCTGTTTGGACCTCCGGGAACAGGAAAAACAATGCTGGCAAAAGCCATAGCCAAAGAAGCTGGAGCAAGTTTCATAAATGTCTCGATGTC TACCATTACTTCAAAATGGTTTGGTGAAGATGAGAAGAATGTCCGAGCTCTATTCACACTTGCTGCAAAGGTTTCCCCAACTATCATATTTGTGGACGAA GTTGATAGCATGCTAGGGCAGCGGACTAGGGTTGGTGAGCATGAGGCCATGCGGAAGATTAAGAATGAGTTTATGACTCACTGGGATGGTCTGATGACAA AACCTGGCGAGCGTATTCTTGTCCTTGCAGCAACCAACAGGCCATTTGACCTTGATGAAGCAATTATCAGGCGGTTTGAGCGCAGAATTATGGTCGGTCT TCCATCTATTGAGAGCAGGGAAAGGATTTTAAAAACTCTTCTGTCAAAAGAAAAAACAGAAGGCTTAGACTTCAAAGAGCTTGCAACCATGACAGAAGGA TATAGTGGAAGTGATCTTAAGAACTTGTGTGTCACAGCAGCATATCGACCAGTCAGAGAGCTTTTACAGCAGGAGCGAGTGAAGGATAAGGAAAAGAAGC AGAAAGCCGAAGAAGGCACAAGCTCTGAAGATGCTGCAGATACAAAGGAAGAAGGCACAAGCTCTGAAGATGCTGCAGATAAAAAGGAAGAAGGCAAAGA GGAAAGCGTAATCATTCTAAGGCCATTAAACATGGATGATATGAGACAGGCAAAGAATCAGGTTGCTGCAAGTTTTGCAACTGAGGGTTCGGTAATGAAT GAGCTGAAGCAATGGAATGAGTTGTATGGTGAAGGGGGTTCAAGGAAGAAGCAGCAGTTGACTTACTTCCTCTAG
AA sequence Show only first row Show all	>Potri.012G035400.2 pacid=42784080 polypeptide=Potri.012G035400.2.p locus=Potri.012G035400 ID=Potri.012G035400.2.v4.1 annot-version=v4.1 MEQKHMLLSALSVGVGVGMGLGLASGQKVSRWAGGNGSIDGVTVEQIEQELMRQVLDGRESEVTFDEFPYYLSEKIRMLLTSAAFVHLKHADFSKHTRNL SPASRTILLSGPAEFYHQMLAKALAHNFESKLLLLDVHDFSIKMQSKYGCIKKEPSFTSSISGFTLERMSSLFGSFSILSTKEETRGMEGSNNPPKLRRN ASTASDMSSISSQSASTNPAPLKHSSSWCFDEKLFLQSLYQVLASVSERNSIILYLRDAEKILLQSQRMYTLFEKMLKKLSGNVLILGSRMLDQEDDCRE VDERLALLFPYNIEIKPPEDETHLVSWKAQLEEDMKKIQIQDTKNHIAEVLAANDIECDDFSSICHADTMVLSNYIEEIVVSAISYHLMNNKDPEYRNGK LVISSKSLSHGLSIFQEGKSDGKDTLKLETNAEAGKETEGEEAVGAKNDIKSETEKSVTGAKKDSENQPKTPEVPPDNEFEKRIRPEVIPANEIGVTFAD IGALDETKESLQELVMLPLRRPDLFNGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDE VDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSIESRERILKTLLSKEKTEGLDFKELATMTEG YSGSDLKNLCVTAAYRPVRELLQQERVKDKEKKQKAEEGTSSEDAADTKEEGTSSEDAADKKEEGKEESVIILRPLNMDDMRQAKNQVAASFATEGSVMN ELKQWNELYGEGGSRKKQQLTYFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52882			P-loop containing nucleoside t...		Potri.012G035400 [exp]	0	1
AT5G40250			RING/U-box superfamily protein...		Potri.001G351466 [exp]	3.16	0.8348
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007300 [exp]	6.92	0.8071
AT3G24000			Tetratricopeptide repeat (TPR)...		Potri.006G001200 [exp]	12.84	0.8533
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Potri.006G148200 [exp]	14.96	0.8572
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.010G029000 [exp]	16.73	0.8161
AT1G32260			unknown protein		Potri.001G138200 [exp]	19.89	0.7903
AT1G06230		GTE4	global transcription factor gr...		Potri.011G096400 [exp]	23.55	0.7486
AT1G04840			Tetratricopeptide repeat (TPR)...		Potri.001G316500 [exp]	26.22	0.8457
					Potri.014G065000 [exp]	30.39	0.8321
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.005G146700 [exp]	31.46	0.7670	Pt-XF1.2

Compare expression of checked genes

Potri.012G035400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.