Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52880 199 / 1e-62 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027547 [exp] 244 / 4e-80 AT5G52880 208 / 1e-66 F-box family protein (.1) Lus10039308 [exp] 244 / 4e-80 AT5G52880 211 / 1e-67 F-box family protein (.1) Lus10027549 [exp] 242 / 2e-79 AT5G52880 207 / 2e-66 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.012G035500.1 pacid=42783466 polypeptide=Potri.012G035500.1.p locus=Potri.012G035500 ID=Potri.012G035500.1.v4.1 annot-version=v4.1 ATGTCAGACCAAGTGGAAAGATACCAAATTCTTGGTTACAAGGAGGCTCTAACAAGAACCCACCATTACCCTGTAGCTTGTAAAGAACTAAGCTTGATTC TACGAGAAGCTTATAGCAAACTCCCCAAGAATCTTCAATCTCTCGTCTTTCAAGACACCCTTTCTTCCTTCAAACTCCTTCCTCAAATGTGGACAAACAA TGCTGTTTCAGCAGCGCATCTCCTAGTTCAGAGTGCTGAGGCTACATTGCCCAAGCAGAAGAAGAATGTTGCTACAAAAGAATTCAAACAAGCAATGGTT GCTTCTAAAAGGCGTGGTAAAGCGTGTCGGATGCAAGAATGTCATACTGAATTGACACAGGATGTTCTTGTAGACATCTTCAGTTTGCTCGACACACGGT CATTGGTTTCTGCCTCACTAGTCTCCCGATCATGGAATGCTGCAGCTTGTAATAACCATCTGTGGCAATCCCTATATGCCACGATTTTTGCAAGTGACCA TAATTCCTCGAATGCTAAGGATTTGCTGAATGGCAGGCGAGGTGAGGATAATAAGGATAACAACAGTGTTGATTGGAGAGAGGCCTTTAAAAGAGCATAT ATAGACAATTCATCGAAGAGACTAACAACTAGTAGAGGCTACTGTTTGTACTGTGATATGATAGTGTGGCTTGATGGCCTGAAATGTGGTAGTGGAAAAT GCGGACCGCAGCCTAAAATGCAGCCAATTGTTCCCAAATCATCTGAGCAGGTTGTTGAGTATCTATTAGATGGCTCTTCATCTATGATGTCCTCGGACAG TGATAGTGACTTGGATGATTGCTTTGATGAATGGTACATTCCCAAGTTATGGGCACACCCACTGAATCAGTACAGGCCAGGATAA
AA sequence Show only first row Show all	>Potri.012G035500.1 pacid=42783466 polypeptide=Potri.012G035500.1.p locus=Potri.012G035500 ID=Potri.012G035500.1.v4.1 annot-version=v4.1 MSDQVERYQILGYKEALTRTHHYPVACKELSLILREAYSKLPKNLQSLVFQDTLSSFKLLPQMWTNNAVSAAHLLVQSAEATLPKQKKNVATKEFKQAMV ASKRRGKACRMQECHTELTQDVLVDIFSLLDTRSLVSASLVSRSWNAAACNNHLWQSLYATIFASDHNSSNAKDLLNGRRGEDNKDNNSVDWREAFKRAY IDNSSKRLTTSRGYCLYCDMIVWLDGLKCGSGKCGPQPKMQPIVPKSSEQVVEYLLDGSSSMMSSDSDSDLDDCFDEWYIPKLWAHPLNQYRPG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52880			F-box family protein (.1)		Potri.012G035500 [exp]	0	1
AT3G12300			unknown protein		Potri.003G193900 [exp]	2.00	0.7618
AT3G53970			proteasome inhibitor-related (...		Potri.016G103800 [exp]	4.89	0.7480
AT1G26800			RING/U-box superfamily protein...		Potri.008G087200 [exp]	13.41	0.7156
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Potri.001G044700 [exp]	13.96	0.7528
AT2G43190			ribonuclease P family protein ...		Potri.001G033900 [exp]	17.94	0.7226
AT1G04130		TPR2, AtTPR2	tetratricopeptide repeat 2, Te...		Potri.002G255300 [exp]	21.28	0.7583
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.014G116800 [exp]	22.18	0.7568	GOLS2.1
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Potri.006G069500 [exp]	24.89	0.7016
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Potri.012G038300 [exp]	25.47	0.6852	Pt-EPR1.2
AT3G03750		SUVR3, SDG20	SET domain protein 20 (.1.2)		Potri.013G064600 [exp]	31.55	0.7346	SDG935

Compare expression of checked genes

Potri.012G035500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.