Plant FIBer expression Database

Potri.012G035700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52870 115 / 3e-29 MAKR5 MEMBRANE-ASSOCIATED KINASE REGULATOR 5, unknown protein
AT1G64080 63 / 8e-11 MAKR2 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G027500
[exp]
473 / 7e-168 AT5G52870 90 / 4e-20 MEMBRANE-ASSOCIATED KINASE REGULATOR 5, unknown protein
Potri.001G098000
[exp]
115 / 1e-28 AT1G64080 145 / 8e-39 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein
Potri.003G133500
[exp]
101 / 1e-23 AT1G64080 147 / 2e-39 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017532
[exp]
92 / 3e-20 AT1G64080 175 / 1e-49 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein
Lus10039306
[exp]
78 / 5e-16 AT5G52870 54 / 5e-08 MEMBRANE-ASSOCIATED KINASE REGULATOR 5, unknown protein
Lus10028754
[exp]
79 / 1e-15 AT1G64080 185 / 1e-53 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein
PFAM info
Representative CDS sequence
>Potri.012G035700.1 pacid=42783688 polypeptide=Potri.012G035700.1.p locus=Potri.012G035700 ID=Potri.012G035700.1.v4.1 annot-version=v4.1
ATGGAAGCTCTCTACTTCCTCAGGTTCTGGAGACCCACCACCAACTCCCACAAAGAAAACCGGCCCTCTAGTGGAAGCAGTGATGACACCACCGAGATCC
CATTCACAGATTGTGAATTTGAGGAGGGAGAAGACTCGTTCTTTGAATTGGAACTTACTGTGCCTGACTTTGACACCAGTAAAAGCAGCAGCAGCAGCAA
CACCACCAGCATAAAAAACTACCACCCACTAGACAAGGAAAGCAACATCTTTGACCCTAAACAAGCACCTCCCCTCAATTTAGCCCACAAAGAGAGCAAC
TCCCCCCAGCATATATTTCATCCACCAACTCTTTCAACTGATCATCTCCTTTCGAAGAGAAAAATCCTCCCTATTGAACCCGTTTCATTCAAACCTCAGT
CTCCAATCTCCCTACTCAAATCAGCTCCGAGGTTTAAGATCCTCATGTTCAAGAAATCAAAGTCAATGGCATCGCAGAAAACAGAGAAAACAGGGGCGAC
AGAGTACTTGAAAGCAAATAACAAGAAGCATGAAAGCAACAAGCTTTTCACTGTCAAGTTCAAGCTTGAAGAGGTCACAAATATTTCTTTCTTCACCAAA
CAGAACAGCTTGAGAAAGCAGATCTCTCATGAATCCGATGACAATGATACATCAAAGCGATTTTCAAAGGAAATGATACAGAAGTACTTGAAGCTAATCA
AACCATTATACATCAAGGTTTCCAAGAAGCATAGTGACAAGATGAAATTCTCCAGTGAGTTGTCAGTCGGGTCTCCGTCATCTTCTCCGGCAACAGTGCC
GGCGAAGGAGAAACAGGGGAGTTTTCCGTCAGGGATTAGAGTGGTTTCTAGGCATCTTGGAAAAAGCAAATCAGCTTCAGCGACCACAGGAGTTTCTCCT
CCAGTTGTGAGTAGGAGAGATGATTCTCTGCTGCTACAACATGATGGGATTCAAAGTGCCATCCTGCATTGCAAGAAATCTTTCAATTCTTCAAGAGATT
CTTCTTCAATGTCAAGATTCGTAAGTGACCCTTCGCACGAGAAATCAATGTCTTCACCAAGGATTTCATCTAGTGAATAG
AA sequence
>Potri.012G035700.1 pacid=42783688 polypeptide=Potri.012G035700.1.p locus=Potri.012G035700 ID=Potri.012G035700.1.v4.1 annot-version=v4.1
MEALYFLRFWRPTTNSHKENRPSSGSSDDTTEIPFTDCEFEEGEDSFFELELTVPDFDTSKSSSSSNTTSIKNYHPLDKESNIFDPKQAPPLNLAHKESN
SPQHIFHPPTLSTDHLLSKRKILPIEPVSFKPQSPISLLKSAPRFKILMFKKSKSMASQKTEKTGATEYLKANNKKHESNKLFTVKFKLEEVTNISFFTK
QNSLRKQISHESDDNDTSKRFSKEMIQKYLKLIKPLYIKVSKKHSDKMKFSSELSVGSPSSSPATVPAKEKQGSFPSGIRVVSRHLGKSKSASATTGVSP
PVVSRRDDSLLLQHDGIQSAILHCKKSFNSSRDSSSMSRFVSDPSHEKSMSSPRISSSE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G52870 MAKR5 MEMBRANE-ASSOCIATED KINASE REG... Potri.012G035700
[exp]
0 1
AT1G31420 FEI1 FEI 1, Leucine-rich repeat pro... Potri.001G129000
[exp]
8.24 0.6184
AT5G59790 Domain of unknown function (DU... Potri.010G209600
[exp]
11.61 0.6134
AT2G41370 BOP2 BLADE ON PETIOLE2, Ankyrin rep... Potri.016G040500
[exp]
11.61 0.6355
AT3G13870 GOM8, RHD3 GOLGI MUTANT 8, Root hair defe... Potri.003G038900
[exp]
20.34 0.6084
AT1G63940 MDAR6 monodehydroascorbate reductase... Potri.001G099600
[exp]
20.49 0.5636
AT4G32730 MYB ATMYB3R-1, PC-M... C-MYB-LIKE TRANSCRIPTION FACTO... Potri.018G038000
[exp]
21.11 0.6398 MYB222
AT5G43270 SBP SPL2 squamosa promoter binding prot... Potri.018G149900
[exp]
23.47 0.5678
AT4G22670 ATHIP1, TPR11 tetratricopeptide repeat 11, H... Potri.001G118900
[exp]
33.27 0.5436
AT4G37790 HD HAT22 Homeobox-leucine zipper protei... Potri.005G147100
[exp]
33.33 0.5874 HAT22.2
AT1G71010 FAB1C FORMS APLOID AND BINUCLEATE CE... Potri.010G113700
[exp]
42.20 0.5812

Potri.012G035700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.