Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19180 843 / 0 ATCDP1, ARC6H, PARC6 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) AT5G42480 84 / 2e-16 ARC6 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G028101 [exp] 1248 / 0 AT3G19180 857 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Potri.012G036100 [exp] 369 / 2e-122 AT3G19180 297 / 4e-96 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Potri.005G235000 [exp] 91 / 2e-18 AT5G42480 884 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026359 [exp] 859 / 0 AT3G19180 752 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Lus10042298 [exp] 561 / 0 AT3G19180 635 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Lus10033922 [exp] 90 / 3e-18 AT5G42480 827 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1) Lus10024309 [exp] 67 / 7e-11 AT5G42480 814 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13355 [poplar] [flax] DUF4101 Protein of unknown function (DUF4101)
Representative CDS sequence Show only first row Show all	>Potri.012G035900.3 pacid=42782660 polypeptide=Potri.012G035900.3.p locus=Potri.012G035900 ID=Potri.012G035900.3.v4.1 annot-version=v4.1 ATGGCAGTGTCTTATTTGAATCTGACTCCGACGATTATTTCTTCCTTTTCTTCTTCTCGTTGCTGTTACTGTTATTTATATCGAAATCCCGAAGTCAGTT TTAACAGAAAAAGCGATTGTCCAAAACGCTCTCTGCTTTGTTCAGGTTTTGTTAAAAAAGCTGCTTCCTCCTCCTCCTTTGGAATTGGAGTATCTGTTTC TAGGGTTTCGAGAAAGAGTGATTTCGAATCCAACAACAGCAAGTGGATCTTGAATGCCACTACTGATTCTCGCATTCTTGACAATGCCGCTGCTACAGCC ACTGTTGAAATCCCCGTCACTTGTTATCAGGTTGTTGGTGTTCCTGATAAGGCAGAGAAGGATGAGATTGTTAAGTCGGTGATGCAGTTGAAAAATGCTC AAGTGGAAGAGGGTTATACCATGGATGCTGTTATGTCTCGGCAGGATCTTCTAATGGATGCAAGGGATAAGCTTCTTTTTGAACCAGAATATGCTGGGAA TGTGAGGGAGAAGATCCCACCTAAATCCACTCTGCGAATCCCATGGGCTTGGTTGTCTGGTGCCCTTTGCCTGCTTCAAGAGGTTGGGGAAGAAAAGCTG GTGCTGGATATTGGTCGAGCAGCTCTCCAGCATCCAGATGCTAAGCCATATTCTCATGATGTGCTTCTATCCATGGCATTGGCAGAGTGTGCAATTGCGA AGATTGGTTTTGAGAGGAACAAAGTGTCCCTCGGATTTGAAGCTCTTGCTCGTGCCCAGTGTCTTCTTAGGTGTAAAATCTCACTTGGCAAGATGACATT ACTATCTCAGATAGAAGAATCTCTGGAGGAGCTTGCACCTGCCTGCACATTGGAATTATTAGGCATGCTGCACTCTCCTGAAAATGCAGAACGGAGACGA GGAGCGATTGCTGCCCTGCGTGAATTGCTGAGGCAGGGCCTTGATGTGGAAACATCATGCAGAGTTCAAGATTGGCCATGTTTTCTGAGCCAAGCACTTA ACAGACTCATGGCTACAGAAATAGTTGACCTCCTTCCTTGGGATGATTTAGCCCTTGTGCGCAAGAATAAGAAATCACTTGAGTCACAGAATCAAAGGGT TGTGATCGATTACAATTGTTTCTACATGGCGATTTTAGCTCATATTGCTCTTGGTTTTTCTAGCAAGCAAACAGAATTGGTCAACAAAGCAAAAACTATA TGTGAGTGTTTGATGGCATCAGAGAGTATTGATCTAAAATTTGAAGAAGCTCTCTGCTTGTTTCTGCTCGGTCAGGGTAATCAAGACCAGGCAGTTGAAA AGCTTCAGCAGATAGAATCAAATTCAAATCCTGCTACAAGGAGTCTGGTCCCAGGAAAGGAGATTAAAGATGTCTCTGGTGCAAAACCATCATTGGAAAC ATGGCTGAAGGATTCTGTGCTTGCTATCTTTTCAGATACTAGAGGCTGCACTCCTTCTTTGGTGAGCTTTTTTGGTGGTGAAAGGAGAGCTATTGCAAGC AAGAAAAGTAGAATAGCTGCACAAGTCACTGCTCCTGTATTCCATCGACCACTGTCTGACATTGCAATGAAACAAATGGATGCTGGGGAAACAATTCCAT ATATGAACTCTTCTCAACACTTTAGGTCTGCTGTCAAGCAATTAGCTCCAACTGATCTGCAAAGCTCATTGATATTGACCAAGAATGCCAGTGGAAGCAA TGTGAATGAACCGTCAGTTCAATTGAAGAGAGATCTTGGTGTTTACAATAGAGGAACTTGGGAAAGTTGGTTAGAACGTGGAGATCTGGTTGGAAAGATT AGTTTTGTTGGAGTATTAGGTTGTGTTGTGTTTATTACCTTTAAACTGTCAGGCATGAATGTGGGAAGGATGAGAATTGCATCTAGATTAACCTCTGATA GAACTAGTATGGGCACCAGTACCCTTGCCTGGACAACAGATTCTTCTCTTGATCGCAATGTTCACCCTGTTTATATTAGTCAAAGTGGTATTTTTGGCAG ATTGAGAAATCTGTTGTCCATGATTAAGGTGCAGTTTGGAAACCGATCATATACTAAAAGATTGCAAGGTTCGAGGCTTGCTGCTAGTATATCATCTTCT ATTGCAACAATATCTAGGAAGCAAATGCCTGTTGAAGAAGCTGAAGCTCTTGTTAAGCATTGGCAAGCAATTAAAGCTGAAGCTCTGGGTCCTGGCCACC AAGTTCACAGCCTCTCTGAAGTCCTTGATGAGTCTATGCTTGCCCAGTGGCAAGCTTTAGCTGATGCAGCAAAAGCCCAGTCCTCTTATTGGAGATTTGT TTTGCTGCAACTGTCCATTCTGCAAGCTCATATTTTCTCAGATGGATATGGTGTTGAGATTGCAGAAATCGAAGCTCTCCTTGAGGAAGCAGCAGAGCTG GTTGATGAATCCCTGCAGAAGAACCCAAACTATTACAGCACCTACAAGATTCTTTATGTTCTAAAAAGGCAAGATGACGGATCATGGAGGTTCTGCCAAG GTGATATTCAAACAACATGA
AA sequence Show only first row Show all	>Potri.012G035900.3 pacid=42782660 polypeptide=Potri.012G035900.3.p locus=Potri.012G035900 ID=Potri.012G035900.3.v4.1 annot-version=v4.1 MAVSYLNLTPTIISSFSSSRCCYCYLYRNPEVSFNRKSDCPKRSLLCSGFVKKAASSSSFGIGVSVSRVSRKSDFESNNSKWILNATTDSRILDNAAATA TVEIPVTCYQVVGVPDKAEKDEIVKSVMQLKNAQVEEGYTMDAVMSRQDLLMDARDKLLFEPEYAGNVREKIPPKSTLRIPWAWLSGALCLLQEVGEEKL VLDIGRAALQHPDAKPYSHDVLLSMALAECAIAKIGFERNKVSLGFEALARAQCLLRCKISLGKMTLLSQIEESLEELAPACTLELLGMLHSPENAERRR GAIAALRELLRQGLDVETSCRVQDWPCFLSQALNRLMATEIVDLLPWDDLALVRKNKKSLESQNQRVVIDYNCFYMAILAHIALGFSSKQTELVNKAKTI CECLMASESIDLKFEEALCLFLLGQGNQDQAVEKLQQIESNSNPATRSLVPGKEIKDVSGAKPSLETWLKDSVLAIFSDTRGCTPSLVSFFGGERRAIAS KKSRIAAQVTAPVFHRPLSDIAMKQMDAGETIPYMNSSQHFRSAVKQLAPTDLQSSLILTKNASGSNVNEPSVQLKRDLGVYNRGTWESWLERGDLVGKI SFVGVLGCVVFITFKLSGMNVGRMRIASRLTSDRTSMGTSTLAWTTDSSLDRNVHPVYISQSGIFGRLRNLLSMIKVQFGNRSYTKRLQGSRLAASISSS IATISRKQMPVEEAEALVKHWQAIKAEALGPGHQVHSLSEVLDESMLAQWQALADAAKAQSSYWRFVLLQLSILQAHIFSDGYGVEIAEIEALLEEAAEL VDESLQKNPNYYSTYKILYVLKRQDDGSWRFCQGDIQTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.012G035900 [exp]	0	1
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.010G002900 [exp]	3.87	0.8090
AT3G52640			Zn-dependent exopeptidases sup...		Potri.004G082900 [exp]	4.35	0.7139
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Potri.014G083800 [exp]	4.58	0.7480
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Potri.015G012600 [exp]	6.32	0.7129
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G050700 [exp]	8.00	0.7812
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.006G025900 [exp]	9.59	0.7793	AGO913
AT3G13690			Protein kinase protein with ad...		Potri.001G200000 [exp]	10.09	0.6874
AT2G21120			Protein of unknown function (D...		Potri.001G305700 [exp]	10.24	0.7013
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070000 [exp]	11.48	0.7099
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Potri.011G071000 [exp]	14.07	0.7372

Compare expression of checked genes

Potri.012G035900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.