Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19180 298 / 2e-96 ATCDP1, ARC6H, PARC6 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) AT5G42480 57 / 4e-09 ARC6 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G035900 [exp] 370 / 3e-123 AT3G19180 843 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Potri.015G028101 [exp] 348 / 6e-115 AT3G19180 857 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Potri.005G235000 [exp] 59 / 1e-09 AT5G42480 884 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042298 [exp] 313 / 6e-103 AT3G19180 635 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Lus10026359 [exp] 306 / 3e-99 AT3G19180 752 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Lus10033922 [exp] 55 / 2e-08 AT5G42480 827 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1) Lus10024309 [exp] 52 / 2e-07 AT5G42480 814 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G036100.7 pacid=42783653 polypeptide=Potri.012G036100.7.p locus=Potri.012G036100 ID=Potri.012G036100.7.v4.1 annot-version=v4.1 ATGCTCAAAGGAAGAGGGTTATACCTTGGATGCTGTTATGTCTCGGATCTTCTAATGGATGCAAGGGATAAGCTTCTTTTTGAACCAGAATATGCTGGGA ATGTGAGGGAGAAGATCCCACCTAAATCCTCTCTGCGAATTCCATGGGCTTGGTTGTCTGGTGCCCTTTGCCTGCTTCAAGAGGTTGGGGAAGAGAAGCT GGTGCTGGATATTGGCCGAGCAGCTCTCCAGCATCCAGATGCTAAGCCATATTCTCATGATGTGCTTCTATCCATGGCATTGGCAGAGTGTGCAATTGCG AAGATTGGTTTTGAGAGGAACAAAGTGTCCCTCGGATTTGAAGCTCTTGCTCGTGCCCGGTGTCTTCTTAGTTGTAAAATCTCACTTGGCAAGATGGCAT TACTATCTCAGATAGAAGAATCTCTGGAGGAGCTTGCACCTGCCTGCACATTGGAATTATTAGGCATGCTGCACTCTCCTGAAAATGCAGAACGGAGACG AGGAGCGATTGCTGCCCTGCGTGAATTGCTGAGGCAGGGCCTTGACGTGGAAACATCATGCAGAGTCCAAGATTGGCCATGTTTTCTGAGCCAAGCACTT AACAGACTCATGGCTACAGAAATAGTTGACTTGATCATGCGTAACTTGTATGAAATTTATGCATTTTTTTTTATGATAAAGTTAATGGTAAAATCGCGTG CCTTTAAAAAAACAAGTAAAATGGCATTTAAATTAGTCTTGTGA
AA sequence Show only first row Show all	>Potri.012G036100.7 pacid=42783653 polypeptide=Potri.012G036100.7.p locus=Potri.012G036100 ID=Potri.012G036100.7.v4.1 annot-version=v4.1 MLKGRGLYLGCCYVSDLLMDARDKLLFEPEYAGNVREKIPPKSSLRIPWAWLSGALCLLQEVGEEKLVLDIGRAALQHPDAKPYSHDVLLSMALAECAIA KIGFERNKVSLGFEALARARCLLSCKISLGKMALLSQIEESLEELAPACTLELLGMLHSPENAERRRGAIAALRELLRQGLDVETSCRVQDWPCFLSQAL NRLMATEIVDLIMRNLYEIYAFFFMIKLMVKSRAFKKTSKMAFKLVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.012G036100 [exp]	0	1
AT5G05800			unknown protein		Potri.015G137800 [exp]	2.82	0.8282
AT5G08110			nucleic acid binding;ATP-depen...		Potri.012G063000 [exp]	4.58	0.7976
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.003G128000 [exp]	11.83	0.7640	Pt-GL3.2
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.005G183800 [exp]	12.96	0.7632
AT5G52140			RING/U-box superfamily protein...		Potri.015G138700 [exp]	17.23	0.7548
AT5G20270		HHP1	heptahelical transmembrane pro...		Potri.018G124754 [exp]	17.32	0.7290
AT5G05670			signal recognition particle bi...		Potri.009G001600 [exp]	18.57	0.7354
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.001G299000 [exp]	18.70	0.7188
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G024200 [exp]	20.19	0.7556
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.018G145500 [exp]	22.44	0.7329

Compare expression of checked genes

Potri.012G036100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.