Plant FIBer expression Database

Potri.012G036400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0263 His-Me_finger PF04231 Endonuclease_1 Endonuclease I
Representative CDS sequence
>Potri.012G036400.1 pacid=42782713 polypeptide=Potri.012G036400.1.p locus=Potri.012G036400 ID=Potri.012G036400.1.v4.1 annot-version=v4.1
ATGCAGTTTCAAGGGCTTCTGTTTACTGGTTGCTACTCCAATCTTCTAGTAGCTGACAGGAGATACAACCTCACAGTCAACCCCTCTTTCACACTCAAGA
ACAAGTCTTCCTCAGTAAGGGCACACGCTGCCCTCAAACTTGGCCATATTCAAAGAAGCAACAGCACCAGTACTTGTGCCAGAGGTTTATTATGGAGATG
GGGGGTGTCTAAAGTCATCTCCATTTACTTGTTGTGTTGCCTCAATCTTGTAGCACTGGCTCAAGATTATCCATCTTTATCCACTTCTTCGTATGAATGT
GAGGATGTTAGCAGTTACTATGCAAGTGTGAAGGGATTAGAAGGGAAAGCACTGAAAAAGAAACTTCATTCTGTTATCTCCAAGCATCAGTCACTGTCTT
ACAAAGAGGTTTGGGATGCCCTCAAGTTTCTTGATGCTACAAATGTTGATAGGCCTCAAGCTTCATCTGGGATAGTTGAAATTTACTCTCTGAGAGCTGT
TTCGAAAAACTTAGCTGGAAAACCTGAAGGATGGAATAGGGAACATTTGTGGCCTCGTTCTTATGGGCTAATTAGCGGTCCATCCTTGACTGATCTACAT
AATATTCGCCCGGCAGATGTGAATGAGTTCCATGCAGTAAATTCATCTCGGGGAAACAAATACTACGGAGAATGCAATAAGAAATCAATACGATGTCTAA
AGCCTGCAAACAAAGAAGCTGCTTTTGACACGGAAACAGACAAGGAGAGATGGACACCACCTACAAAGGTTAGAGGGGATATAGCAAGGGCAATAATGTA
CATGGCTGTATGTTATGGGCTTCATCAACCAGGTGGACAAAATCTTCACCTTTCTGATTCTCCAAGCATTGAGAACAGAGAGATGGGACTTCTTTCTACA
TTGCTAAAATGGAATGAAGTTGATCCACCTTCAAGAGAAGAGAAGCTGAGAAATGACAGGGTCTGCAAGTTTTATCAGCACAATAGAAATCCTTTTGTCG
ATCATCCTGAGTATGTCAGTCTTATTTGGAAAAGAGTTACCCCAACCCACCAAAATCGGCATTTTCCTGCCAAGAAGGAAATAATGAAGTGA
AA sequence
>Potri.012G036400.1 pacid=42782713 polypeptide=Potri.012G036400.1.p locus=Potri.012G036400 ID=Potri.012G036400.1.v4.1 annot-version=v4.1
MQFQGLLFTGCYSNLLVADRRYNLTVNPSFTLKNKSSSVRAHAALKLGHIQRSNSTSTCARGLLWRWGVSKVISIYLLCCLNLVALAQDYPSLSTSSYEC
EDVSSYYASVKGLEGKALKKKLHSVISKHQSLSYKEVWDALKFLDATNVDRPQASSGIVEIYSLRAVSKNLAGKPEGWNREHLWPRSYGLISGPSLTDLH
NIRPADVNEFHAVNSSRGNKYYGECNKKSIRCLKPANKEAAFDTETDKERWTPPTKVRGDIARAIMYMAVCYGLHQPGGQNLHLSDSPSIENREMGLLST
LLKWNEVDPPSREEKLRNDRVCKFYQHNRNPFVDHPEYVSLIWKRVTPTHQNRHFPAKKEIMK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.012G036400
[exp]
0 1
AT2G41720 EMB2654 EMBRYO DEFECTIVE 2654, Tetratr... Potri.006G049900
[exp]
1.41 0.8317
AT3G26410 TRM11, AtTRM11 tRNA modification 11, methyltr... Potri.003G022701
[exp]
4.58 0.7703
AT3G47390 PHS1 PHOTOSENSITIVE 1, cytidine/deo... Potri.019G054000
[exp]
8.83 0.7394
AT2G02710 PLPC, PLPB, PLP... PAS/LOV PROTEIN C, PAS/LOV PRO... Potri.010G053500
[exp]
9.48 0.7537
AT3G15690 Single hybrid motif superfamil... Potri.003G061400
[exp]
10.09 0.7203
AT1G30520 AAE14 acyl-activating enzyme 14 (.1) Potri.011G164100
[exp]
10.95 0.7900
AT1G34380 5'-3' exonuclease family prote... Potri.013G114400
[exp]
16.97 0.7433
AT1G68890 magnesium ion binding;thiamin ... Potri.010G135500
[exp]
23.36 0.7338
AT3G48110 EDD1 EMBRYO-DEFECTIVE-DEVELOPMENT 1... Potri.014G049200
[exp]
23.87 0.7493
Potri.016G007450
[exp]
23.97 0.7149

Potri.012G036400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.