Plant FIBer expression Database

Potri.012G036500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G20600 455 / 3e-155 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011961
[exp]
533 / 0 AT5G20600 459 / 1e-156 unknown protein
Lus10027609
[exp]
513 / 3e-177 AT5G20600 452 / 6e-154 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05997 Nop52 Nucleolar protein,Nop52
Representative CDS sequence
>Potri.012G036500.1 pacid=42783177 polypeptide=Potri.012G036500.1.p locus=Potri.012G036500 ID=Potri.012G036500.1.v4.1 annot-version=v4.1
ATGGAGGAGGAACTCCACATCCAAGCTCAAACGTCGAAAGCCCTAATAAAACAACTAGCATCAAGCGACACAAAAACCCGAAACAAGTCCTTAAAGATTC
TCTTAAACAAATGGTTACCTTCACAACCTCAAATCTCTGAAGAAACTATGAAGAAAATATGGAAGGGGCTGTTTTACTGTATGTGGCATGCTGACAAGTC
TTTAGCTCAGAACCAACTAATCAACAAATTGAGTTCTTTACTTACTGTTATTGAAGTTGAATCTGTTTGTTTTAGTTATTTCTCTGTTTTTTTAGTTACT
ATGAGAAGGGAATGGTCTGGTATTGATGGGTTGAGGTTAGATAAGTTTTATCTTTTGATTAGGAGATTTGTGAATTCTTTTTTTGGTTTCTTGAAAAAGA
AGGGGTGGGGTTTGGATGTTGTGGAAAGGTTTATGAGGGTTTTTGTGGAAAAAGGATTTTTAGCTGATGATAATTTTTTAGGGAACGGTGTTAATTATCA
TGTTGTTTCGGTTTTTGTTGAGGAATTGAAGGGTTTTTTGCCGGTGAAGGAGGCGGCTTTGGAGGTGATTTTTGGGAATTTTGTGGGTGTAATGGGGAAG
GTGAGTGATAAGGTTTTGCTGGGGAAGATTAAGAGTAATGTGTTTGATCTGTTGTTGCGGATGGGGAAGGAATTGTTGGAGGTGAAGATTAAGGGGGATG
ACGTTGGGGACAATGATGAGGTGGTGATTTTGGGTTCAATTGCTTTGGTAATGGGGTTCTCCAAGAGGTTTTATGAGTTGGGTTCTTCAGTCGAGTGTTG
TCAAGGGAATAGGAAAGTGGTTTTGGGGTTACATGAAGTGTTTTTGAAGTTAGAGAAGGATTTCGTGGCCTCAGGGATCAAGATTGCACTTCCAGAGAGT
AATGGTGACGAGGATGAAGAGGAGGTGCCAGCTTTGGTTCCTATTGATAGTGGTATGGGAGTGGAAGGTTTGAATGGTGACGTTGCTAATGGGCCTGGTA
GCAAGAAATTGAAGAAAAGCAAAAAGGCAAAGGAGTCGGATGGCAATAGCAAAAAGGCTAAGAAGAAGAAAAGGAATGTCATTTCCGGTTCCCACAGTGA
GAGTGATTCTATGGCTGATGAGAATGGTTATGAGGATTTACCAAATGGGGAGAATTCAAGCAAAGAAAAGACTGTGGATGATAATTTGGTAAGGTTTGAT
GAATCTGCCATAGCAAATCTTCAGAGGCAATTTGAGAAAGTTGCCGCAGAAGTGGGCATAGATGAGGGTGTCACTAGTGTCTGTGATTTTCCTAAAGTCA
CTGGCAACGGTAATCTTTCCAAAAAGAGAAAGAGAGCGAAGAGGGTGGAATTGAAGCAATCTGAAAATCAAGAATCGAACGGCCAAGAAGATGATGAAGC
TGGCACAAGCACAATGGCAAAGAGCACTGAGAAGAGTGCAAAAAAAGTCCGGTTTTCTATGAAAAACAACTTGATCTGGAAGCCCAGCACTCCTTTACCA
CCACAAAGTTTGAGAATACCGCCTTCTGTGACCCCTAGAGGAAGTGCACTTAAAAAAGGGATACCTCCGGGTCCAGTTAGGGAGATGCCTGCAAAGAAAA
ATATGAAACAAAGAGCGAAATCCATGAAGAAAGTAATCAAAGGCATTTCCCCTGCCACTAAGCGCGTAAAGAAGTTAAAATCACTTGCCGTCTAG
AA sequence
>Potri.012G036500.1 pacid=42783177 polypeptide=Potri.012G036500.1.p locus=Potri.012G036500 ID=Potri.012G036500.1.v4.1 annot-version=v4.1
MEEELHIQAQTSKALIKQLASSDTKTRNKSLKILLNKWLPSQPQISEETMKKIWKGLFYCMWHADKSLAQNQLINKLSSLLTVIEVESVCFSYFSVFLVT
MRREWSGIDGLRLDKFYLLIRRFVNSFFGFLKKKGWGLDVVERFMRVFVEKGFLADDNFLGNGVNYHVVSVFVEELKGFLPVKEAALEVIFGNFVGVMGK
VSDKVLLGKIKSNVFDLLLRMGKELLEVKIKGDDVGDNDEVVILGSIALVMGFSKRFYELGSSVECCQGNRKVVLGLHEVFLKLEKDFVASGIKIALPES
NGDEDEEEVPALVPIDSGMGVEGLNGDVANGPGSKKLKKSKKAKESDGNSKKAKKKKRNVISGSHSESDSMADENGYEDLPNGENSSKEKTVDDNLVRFD
ESAIANLQRQFEKVAAEVGIDEGVTSVCDFPKVTGNGNLSKKRKRAKRVELKQSENQESNGQEDDEAGTSTMAKSTEKSAKKVRFSMKNNLIWKPSTPLP
PQSLRIPPSVTPRGSALKKGIPPGPVREMPAKKNMKQRAKSMKKVIKGISPATKRVKKLKSLAV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G20600 unknown protein Potri.012G036500
[exp]
0 1
AT1G19430 S-adenosyl-L-methionine-depend... Potri.002G260600
[exp]
2.00 0.9158
AT1G02040 C2H2ZnF C2H2-type zinc finger family p... Potri.002G143600
[exp]
2.00 0.9161
AT4G36520 Chaperone DnaJ-domain superfam... Potri.002G033800
[exp]
2.44 0.8827 AUL1.3
AT1G20970 unknown protein Potri.006G191500
[exp]
5.91 0.8795
AT4G08810 SUB1 calcium ion binding (.1) Potri.001G005500
[exp]
6.00 0.9060
AT4G25670 unknown protein Potri.017G143215
[exp]
6.70 0.8686
AT4G35890 winged-helix DNA-binding trans... Potri.005G109400
[exp]
7.07 0.8368
AT2G25290 Phox1 Phox1, Octicosapeptide/Phox/Be... Potri.006G258300
[exp]
7.34 0.8328
AT5G04990 ATSUN1 ARABIDOPSIS SAD1/UNC-84 DOMAIN... Potri.010G247900
[exp]
8.48 0.8574
AT2G27310 F-box family protein (.1) Potri.004G199300
[exp]
8.94 0.8540

Potri.012G036500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.