Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) AT1G55530 160 / 5e-46 RING/U-box superfamily protein (.1) AT3G13430 152 / 3e-43 RING/U-box superfamily protein (.1.2.3) AT3G56580 150 / 9e-43 RING/U-box superfamily protein (.1.2.3) AT5G56340 147 / 2e-40 ATCRT1 RING/U-box superfamily protein (.1) AT2G40830 140 / 9e-39 RHC1A RING-H2 finger C1A (.1.2.3) AT1G60360 138 / 8e-38 RING/U-box superfamily protein (.1) AT4G26400 133 / 8e-36 RING/U-box superfamily protein (.1.2) AT3G46620 130 / 2e-34 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G01980 131 / 4e-34 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G028400 [exp] 465 / 2e-165 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 269 / 4e-89 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 263 / 1e-86 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.016G029300 [exp] 147 / 2e-41 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.006G032100 [exp] 145 / 5e-41 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.003G223200 [exp] 146 / 4e-40 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.009G034800 [exp] 144 / 7e-40 AT3G46620 236 / 8e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.019G032500 [exp] 143 / 2e-39 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 140 / 3e-38 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010179 [exp] 230 / 3e-74 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10030755 [exp] 157 / 4e-45 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10013235 [exp] 155 / 2e-44 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10013397 [exp] 144 / 1e-39 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10004712 [exp] 142 / 5e-39 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040278 [exp] 139 / 5e-39 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10002637 [exp] 142 / 9e-39 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10020258 [exp] 143 / 1e-37 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10003698 [exp] 130 / 3e-35 AT2G40830 263 / 5e-87 RING-H2 finger C1A (.1.2.3) Lus10008874 [exp] 129 / 2e-33 AT5G08139 198 / 3e-59 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain CL0167 [poplar] [flax] Zn_Beta_Ribbon PF14369 [poplar] [flax] zinc_ribbon_9 zinc-ribbon
Representative CDS sequence Show only first row Show all	>Potri.012G036700.1 pacid=42784128 polypeptide=Potri.012G036700.1.p locus=Potri.012G036700 ID=Potri.012G036700.1.v4.1 annot-version=v4.1 ATGTCTTCCACCGGCGGCGTCGGCGTCCCGCAACTCTACTTCTGTTACCAGTGCGACCGAACCGTAACAATAACTCCGTCACCAACCTCCGATCTCTCAT GTCCTAACTGTCAGGAAGGTTTCCTCGAAGAATGTGAATCTCCAAACCCTAGCTCTAACCCTGTCGATTCTGGTCTCGGCCCCGCCATCTTACTCGACGA ATTCGCCTCCATCTTCGGTGGCATGGCCCCCACTCCTCGATCATCAAACAACTCAACAACAACAAACTCTTCTTCCGCGTCGCCGCTTTTTCAAGATCCC GACGGCTTCAATCCTTTCGCGTTCCTTCAAAATTACCTCCAAACCATGAGAGCCGGCGGAGCAAACATTCAGTTTGTGATTGAAAATAATTCTGGTATGG GTGGAATGGACACCACAGGATTTCGTCTTCCGGCGAATCTCGGAGATTATTTTATCGGACCAGGGTTAGAGCAACTGATCCAACAGCTTGCGGAGAATGA TCCTAATAGGTATGGAACTCCGCCGGCATCAAAGTCTGCGGTGGAGAATCTCCCTGATATTAAGGTAACGAAGGAATTATTGGAGTCGGATTCTTCACAG TGTGCGGTTTGTAAGGATAGTTTTGAGCTAGGGGAGGAAGCGAAACAAATCCCTTGTAAGCATATCTATCATAAGGATTGTATTACACCTTGGCTTGAAT TGCATAATTCGTGTCCGGTTTGTCGGTATGAGTTGCCTACTGATGATCCTGATTATGAGCAGAGGAAAGGGAATGGGAATGATGGTGGTTATCAGAATGC GGGTGGTGGGAATAGTGGTGGTGGGTCTTTTAGTGATGGTGATAATAGTGATGGTAACGCACAGACTCCAAGAGACAGGAGGTTTAGGATTGCTTTTCAG TGGCCTTTTAGTAGTGGTAGTGGTAGTGGTAGGTCGGTTGGATCATCAGCGGGGGCTAGCAATAGTGGGAGTGGGAACAACAATGATGAGGATTCGAGAG GGAATACCAACTTTGGATCCGAGACTAGAGAAGAGGATCTTGATTGA
AA sequence Show only first row Show all	>Potri.012G036700.1 pacid=42784128 polypeptide=Potri.012G036700.1.p locus=Potri.012G036700 ID=Potri.012G036700.1.v4.1 annot-version=v4.1 MSSTGGVGVPQLYFCYQCDRTVTITPSPTSDLSCPNCQEGFLEECESPNPSSNPVDSGLGPAILLDEFASIFGGMAPTPRSSNNSTTTNSSSASPLFQDP DGFNPFAFLQNYLQTMRAGGANIQFVIENNSGMGGMDTTGFRLPANLGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSAVENLPDIKVTKELLESDSSQ CAVCKDSFELGEEAKQIPCKHIYHKDCITPWLELHNSCPVCRYELPTDDPDYEQRKGNGNDGGYQNAGGGNSGGGSFSDGDNSDGNAQTPRDRRFRIAFQ WPFSSGSGSGRSVGSSAGASNSGSGNNNDEDSRGNTNFGSETREEDLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19950			RING/U-box superfamily protein...		Potri.012G036700 [exp]	0	1
AT5G65520			Tetratricopeptide repeat (TPR)...		Potri.002G111300 [exp]	9.74	0.8686
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.013G045900 [exp]	17.43	0.8345
					Potri.007G085800 [exp]	21.00	0.8098
AT2G16860			GCIP-interacting family protei...		Potri.004G176200 [exp]	22.31	0.8412
AT3G52105			unknown protein		Potri.006G054200 [exp]	23.49	0.8648
AT3G04610		FLK	flowering locus KH domain, RNA...		Potri.005G056100 [exp]	29.73	0.8164
AT5G63380			AMP-dependent synthetase and l...		Potri.012G094800 [exp]	34.62	0.8177
AT5G01160			RING/U-box superfamily protein...		Potri.006G095600 [exp]	41.85	0.8174
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Potri.008G036400 [exp]	46.43	0.8021
AT3G19950			RING/U-box superfamily protein...		Potri.015G028400 [exp]	48.20	0.8158

Compare expression of checked genes

Potri.012G036700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.