Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55805 130 / 4e-40 BolA-like family protein (.1) AT4G26500 117 / 6e-33 SUFE1, EMB1374, CPSUFE, ATSUFE SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) AT5G09830 47 / 4e-08 BolA-like family protein (.1) AT5G17560 46 / 5e-07 BolA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G165400 [exp] 117 / 9e-33 AT4G26500 404 / 1e-140 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Potri.001G468300 [exp] 115 / 3e-32 AT4G26500 392 / 5e-136 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Potri.013G074100 [exp] 47 / 2e-07 AT5G17560 156 / 6e-49 BolA-like family protein (.1) Potri.001G309200 [exp] 44 / 1e-06 AT5G09830 132 / 4e-42 BolA-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026101 [exp] 171 / 8e-57 AT4G26500 124 / 1e-37 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10002318 [exp] 166 / 1e-54 AT1G55805 119 / 2e-35 BolA-like family protein (.1) Lus10015605 [exp] 121 / 5e-34 AT4G26500 387 / 2e-133 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10032905 [exp] 114 / 2e-31 AT4G26500 380 / 4e-131 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10020347 [exp] 49 / 7e-08 AT5G17560 158 / 2e-49 BolA-like family protein (.1) Lus10009527 [exp] 49 / 7e-08 AT5G17560 145 / 2e-44 BolA-like family protein (.1) Lus10020861 [exp] 46 / 1e-07 AT5G09830 138 / 4e-44 BolA-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01722 [poplar] [flax] BolA BolA-like protein
Representative CDS sequence Show only first row Show all	>Potri.012G036800.1 pacid=42783612 polypeptide=Potri.012G036800.1.p locus=Potri.012G036800 ID=Potri.012G036800.1.v4.1 annot-version=v4.1 ATGGGTTCGCGAGGAGTAGCAAACATGATACTGTCAAGAGCAAGCAGGATGAAAGCAAAATTACAATCATCACTAGAAGCAAGTCTTTTGGAAATCGAAG ACGTATCACACCAGCACGCAGGCCATGCTGCCATGAAAGGCAATACTGCAGGGGAAACTCATTTCAATGTCAAGATTGTGTCTCCCAAATTTGACGGGCT TAATCTAGTGAAGCGTCACCGCTTGGTTTATGATGCACTCTCGGAAGAGTTGCAGTCTGGGTTGCATGCTCTCTCCATAGTTGCCAAGACTCCACAAGAA GAAGGAGCAGCTGCAAAAAAGTGA
AA sequence Show only first row Show all	>Potri.012G036800.1 pacid=42783612 polypeptide=Potri.012G036800.1.p locus=Potri.012G036800 ID=Potri.012G036800.1.v4.1 annot-version=v4.1 MGSRGVANMILSRASRMKAKLQSSLEASLLEIEDVSHQHAGHAAMKGNTAGETHFNVKIVSPKFDGLNLVKRHRLVYDALSEELQSGLHALSIVAKTPQE EGAAAKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55805			BolA-like family protein (.1)		Potri.012G036800 [exp]	0	1
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Potri.014G109400 [exp]	4.00	0.8036
AT2G31490			unknown protein		Potri.006G077400 [exp]	5.47	0.7849
AT3G55600			Membrane fusion protein Use1 (...		Potri.018G133700 [exp]	8.48	0.7192
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Potri.005G054500 [exp]	11.66	0.7388
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Potri.009G136900 [exp]	12.16	0.7838
AT5G61240			Leucine-rich repeat (LRR) fami...		Potri.008G093400 [exp]	14.45	0.7517
AT2G42780			unknown protein		Potri.012G059000 [exp]	14.83	0.7334
AT5G13430			Ubiquinol-cytochrome C reducta...		Potri.001G067900 [exp]	15.42	0.7689
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Potri.001G369000 [exp]	16.24	0.8177
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.005G157700 [exp]	16.24	0.7292	VF14.2

Compare expression of checked genes

Potri.012G036800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.