Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17660 261 / 3e-88 AGD15 ARF-GAP domain 15 (.1) AT5G54310 231 / 3e-73 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT4G05330 105 / 1e-26 AGD13 ARF-GAP domain 13 (.1) AT4G21160 102 / 1e-25 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT5G13300 100 / 9e-24 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) AT3G53710 99 / 1e-23 AGD6 ARF-GAP domain 6 (.1.2) AT4G17890 97 / 3e-23 UBP20, AGD8 ARF-GAP domain 8 (.1.2) AT5G61980 98 / 4e-23 AGD1 ARF-GAP domain 1 (.1) AT2G35210 95 / 1e-22 RPA, AGD10, MEE28 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) AT2G37550 96 / 2e-22 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G127000 [exp] 232 / 1e-73 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 231 / 8e-73 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 226 / 1e-71 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.004G035800 [exp] 213 / 2e-66 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G098500 [exp] 104 / 3e-26 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.001G372000 [exp] 103 / 5e-26 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.001G066800 [exp] 104 / 2e-25 AT5G13300 1192 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.003G163200 [exp] 101 / 3e-24 AT5G13300 1146 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.015G105500 [exp] 100 / 4e-24 AT5G61980 1110 / 0.0 ARF-GAP domain 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027249 [exp] 224 / 1e-73 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 222 / 2e-70 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1) Lus10011238 [exp] 221 / 1e-69 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1) Lus10038582 [exp] 203 / 1e-62 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1) Lus10037882 [exp] 108 / 3e-27 AT5G54310 344 / 4e-114 NEVERSHED, ARF-GAP domain 5 (.1) Lus10001799 [exp] 100 / 8e-24 AT5G13300 1201 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10002572 [exp] 99 / 1e-23 AT5G13300 1149 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10000903 [exp] 97 / 3e-23 AT4G17890 469 / 3e-165 ARF-GAP domain 8 (.1.2) Lus10004562 [exp] 97 / 5e-23 AT4G17890 512 / 0.0 ARF-GAP domain 8 (.1.2) Lus10024165 [exp] 96 / 1e-22 AT3G07940 491 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [poplar] [flax] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Potri.012G036900.1 pacid=42784201 polypeptide=Potri.012G036900.1.p locus=Potri.012G036900 ID=Potri.012G036900.1.v4.1 annot-version=v4.1 ATGAACAGCAAAGCCTCTGTCTCTAAGGAGCTTAATGCCAGGCACACCAAGATATTAGAGGGCCTTCTTAAGCTGCAGGAGAACAGAGAATGCGCTGATT GTCATAGCAAGGCACCGCGATGGGCAAGTGTGAACCTTGGAATATTTATATGCATGCAATGTTCAGGAACTCATCGGGGTCTTGGGGTGCATATTTCACA GGTACGGTCTACCACACTGGATACATGGTTGCCAGAGCAGGTTGCTTTCATGCAATCCGTGGGTAACAGGAGATCCAATAGTTTCTGGGAAGCAGAACTG CCTCCAAATGTTGACAGAAGTGGGATTGACAGATTTATCCATGCTAAGTATGGGGAGAAAAGATGGGTTTCAAGAAATTCAAAGCAACCAACTGAAGTTT TAAGTCGAATTAACTATACTAATGACATGTTGGTAGAAGGTGCAGCTAGTAGGGTTGTTCCGAGGCAAACACGGCCACAGTCTCTTGACGAAGAGAGTTT TACCAGGATCACAGCACAACTTTCTCCTCCAATTACAAGACCTCGTTGGGCTTCGTTGGACATGAAGAGCGATCCAATTGCTTTTCCTACACCAAAGGGA CTAACTGAGAGCATAAAGAGGACCGATGGTCCTACAGACCTCTACAGCTTGCTTTATGTCGATGATACGCAACAAAATACCTCTTCCATGGCAACTCCTT CGAGCTGGGCAACTTTTGATTGA
AA sequence Show only first row Show all	>Potri.012G036900.1 pacid=42784201 polypeptide=Potri.012G036900.1.p locus=Potri.012G036900 ID=Potri.012G036900.1.v4.1 annot-version=v4.1 MNSKASVSKELNARHTKILEGLLKLQENRECADCHSKAPRWASVNLGIFICMQCSGTHRGLGVHISQVRSTTLDTWLPEQVAFMQSVGNRRSNSFWEAEL PPNVDRSGIDRFIHAKYGEKRWVSRNSKQPTEVLSRINYTNDMLVEGAASRVVPRQTRPQSLDEESFTRITAQLSPPITRPRWASLDMKSDPIAFPTPKG LTESIKRTDGPTDLYSLLYVDDTQQNTSSMATPSSWATFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17660		AGD15	ARF-GAP domain 15 (.1)		Potri.012G036900 [exp]	0	1
AT2G26450			Plant invertase/pectin methyle...		Potri.018G051200 [exp]	9.38	0.5928
					Potri.005G192050 [exp]	9.89	0.6072
AT3G07870			F-box and associated interacti...		Potri.010G207401 [exp]	15.29	0.5663
					Potri.004G056250 [exp]	31.62	0.5841
					Potri.001G383801 [exp]	39.94	0.5434
					Potri.013G126450 [exp]	49.15	0.5328
					Potri.018G043850 [exp]	61.48	0.5172
					Potri.004G103350 [exp]	86.25	0.5143
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.005G169000 [exp]	111.66	0.5008
AT2G25185			Defensin-like (DEFL) family pr...		Potri.010G135666 [exp]	130.76	0.4537

Compare expression of checked genes

Potri.012G036900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.