Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54300 70 / 9e-14 Protein of unknown function (DUF761) (.1) AT1G61260 66 / 3e-12 Protein of unknown function (DUF761) (.1) AT4G04990 42 / 0.0003 Protein of unknown function (DUF761) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G028700 [exp] 275 / 9e-93 AT1G61260 68 / 2e-12 Protein of unknown function (DUF761) (.1) Potri.001G406600 [exp] 76 / 6e-16 AT1G61260 192 / 1e-58 Protein of unknown function (DUF761) (.1) Potri.011G044000 [exp] 74 / 3e-15 AT1G61260 227 / 7e-72 Protein of unknown function (DUF761) (.1) Potri.011G126900 [exp] 72 / 1e-14 AT1G61260 182 / 1e-54 Protein of unknown function (DUF761) (.1) Potri.004G035700 [exp] 55 / 1e-08 AT1G61260 135 / 4e-37 Protein of unknown function (DUF761) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018444 [exp] 76 / 8e-16 AT5G54300 212 / 6e-65 Protein of unknown function (DUF761) (.1) Lus10011239 [exp] 71 / 7e-14 AT1G11220 232 / 1e-73 Protein of unknown function (DUF761) (.1) Lus10020090 [exp] 63 / 3e-11 AT1G61260 101 / 6e-24 Protein of unknown function (DUF761) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [poplar] [flax] DUF761 Cotton fibre expressed protein PF14364 [poplar] [flax] DUF4408 Domain of unknown function (DUF4408)
Representative CDS sequence Show only first row Show all	>Potri.012G037001.1 pacid=42783326 polypeptide=Potri.012G037001.1.p locus=Potri.012G037001 ID=Potri.012G037001.1.v4.1 annot-version=v4.1 ATGGCCAATCTGTTTGAGATTTCTTCTTTCAAAACAGGCAAATTTGGTACCACAATCTGGGTTGTAAAGATGATGCTTCTCTGTGTAGGGATCATTTCCA CTTTTATTTTGTTCAAAGTGGCTATAATTCCTTACACTTTTAATCTAATTCTCTCAACTCTTCCTCGCGTATGGATCTCCCTTCGTGGCTGGTTATCTCC TCCTTACATCTATATCATCCTCAACTTCATCATAATCGCCATTGTTGCTTCCTCCATATTTCAACACCCAACACCAACTTTGCTGCAAGAAAAGACAAAT AAAGACACGTCTAAGGAATCTTGCTTGACAGATTCTGCTAAGAAACAGCAAGCAAAGATGGACAAAGAGCCACTGACACCAAAGACAGATCAGCAGGACA CCCTGGAGGATGCATGGACATTAATTATGGAGAAGCAAGGGAAAGCACCAGCAAGGCAGTTAAAGAAGAGTGGCACATGGGACACCCCTCCAAAGGTGTT GCAGAAAGCCAACGGGATGATCACTGCTGCTGGTGATGGTGGTGGGGGGAGAGAACTCGAAAAATCAGATACATTCAACGATTCTGTGTCTTTGAGGAGG GAGAAGTTAATAAGTCAGGACGAGTTGAATCGACGAGCAGAAGAGTTTATCAGAAAGTTTAATTCTGAAATGAGGCTCCAAAGGCAAGAATCTGAACAGC AGTTCCGGGCAATGGTTCGTGGTGGGGTTTAG
AA sequence Show only first row Show all	>Potri.012G037001.1 pacid=42783326 polypeptide=Potri.012G037001.1.p locus=Potri.012G037001 ID=Potri.012G037001.1.v4.1 annot-version=v4.1 MANLFEISSFKTGKFGTTIWVVKMMLLCVGIISTFILFKVAIIPYTFNLILSTLPRVWISLRGWLSPPYIYIILNFIIIAIVASSIFQHPTPTLLQEKTN KDTSKESCLTDSAKKQQAKMDKEPLTPKTDQQDTLEDAWTLIMEKQGKAPARQLKKSGTWDTPPKVLQKANGMITAAGDGGGGRELEKSDTFNDSVSLRR EKLISQDELNRRAEEFIRKFNSEMRLQRQESEQQFRAMVRGGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54300			Protein of unknown function (D...		Potri.012G037001 [exp]	0	1
					Potri.015G015050 [exp]	7.41	0.8138
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Potri.008G093901 [exp]	17.83	0.8614
AT3G44830			Lecithin:cholesterol acyltrans...		Potri.009G150800 [exp]	21.97	0.8518
AT2G33720			AP2/B3-like transcriptional fa...		Potri.003G191901 [exp]	23.57	0.7630
AT3G23750			Leucine-rich repeat protein ki...		Potri.005G049200 [exp]	24.59	0.8543
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Potri.017G067400 [exp]	35.41	0.8411	SYN2.1
AT1G17820			Putative integral membrane pro...		Potri.018G152400 [exp]	40.00	0.8345
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Potri.008G188800 [exp]	45.29	0.8220
AT4G02550			unknown protein		Potri.010G215600 [exp]	45.71	0.8413
					Potri.017G068276 [exp]	101.40	0.7776

Compare expression of checked genes

Potri.012G037001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.