Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73370 1285 / 0 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT5G37180 1138 / 0 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT4G02280 945 / 0 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G49190 919 / 0 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT3G43190 893 / 0 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT5G20830 885 / 0 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT5G11110 144 / 5e-35 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT1G04920 144 / 9e-35 ATSPS3F sucrose phosphate synthase 3F (.1) AT4G10120 142 / 2e-34 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT5G20280 139 / 3e-33 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G029100 [exp] 1586 / 0 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.017G139100 [exp] 1227 / 0 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.004G081300 [exp] 1226 / 0 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.002G202300 [exp] 955 / 0 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.018G063500 [exp] 915 / 0 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.006G136700 [exp] 912 / 0 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.018G025100 [exp] 149 / 1e-36 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.013G095500 [exp] 149 / 2e-36 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Potri.006G064300 [exp] 149 / 2e-36 AT5G20280 1625 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041979 [exp] 1222 / 0 AT1G73370 1190 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10020791 [exp] 1203 / 0 AT1G73370 1200 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10007372 [exp] 1199 / 0 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10017984 [exp] 1140 / 0 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10001468 [exp] 929 / 0 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10020506 [exp] 927 / 0 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10012454 [exp] 884 / 0 AT3G43190 1374 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10010308 [exp] 845 / 0 AT5G49190 1318 / 0.0 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) Lus10013417 [exp] 549 / 0 AT4G02280 1162 / 0.0 sucrose synthase 3 (.1) Lus10008205 [exp] 355 / 8e-115 AT4G02280 466 / 2e-159 sucrose synthase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [poplar] [flax] GT-B PF00862 [poplar] [flax] Sucrose_synth Sucrose synthase
Representative CDS sequence Show only first row Show all	>Potri.012G037200.1 pacid=42782779 polypeptide=Potri.012G037200.1.p locus=Potri.012G037200 ID=Potri.012G037200.1.v4.1 annot-version=v4.1 ATGGCTTCTCAAACAGCTCTTCAGCGATCTGAAACAATTACAGAAAGCATGCCTGAAGCTTTGAGGCAGAGCCGGTATCACATGAAGAAATGTTTTTCCA GGTTTGTTGCACCTGGGAAAAGGCTGATGAAACGCCAACATTTAATGGATGAAGTTGATGAATCAATACAAGATAAGAATGAAAGGCAAAAGGTCTTGGA AGGCTTACTTGGTTACATCCTGAGTTGCACTCAGGAGGCAGCTGTTATTCCACCTTTTGTTGCATTTGCTGTAAGACCGAATCCCGGTTTCTGGGAATAT GTTAAGGTGAATGCTGAAGATTTGAGCGTAGAAGGTATCTCCGTTTCAGAATATTTGCAGTTGAAGGAGATGGTCTTTGATGAAAAATGGGCGAACAACG AAAATGCTTTGGAACTGGATTTTGGAGCTATGGATTTCTCTACCCCTCGCCTAACTCTTTCTTCTTCTATTGGGAATGGAGTCAACTACATGTCAAAGTT CATGTCATCGAAGCTCAGTGGGAGCTCTGAAGCTGCAAAGCCTCTGCTCGACTACTTGTTAGCGCTCAACCATCAAGGAGAGAATCTTATGATCAATCAA ACTCTAGATACAGTTGCCAAGCTTCAAGAAGCATTGATTGTAGCTGAAGTGGTTGTCTCTGCATTTCCGAAAGACACCCCATATCAGGATTTCCAGCAGA GACTGAGAGAGTTGGGCTTTGAGACGGGATGGGGAGACACTGCAGAAAGAGTTAAAGAGACAATGAGGTTGCTTTCTGAATCACTTCAAGCTCCATACCC AATGAAACTGCAATTGCTCTTTAGCAGGATTCCCAACATGTTCAACATTGTGATCTTCTCTCCACACGGCTACTTTGGCCAGTCAGATGTTCTGGGATTG CCAGATACTGGTGGCCAGGTTGTTTACATTCTTGATCAAGTAAGAGCCTTAGAGGAAGAACTCCTACTTAAGATAAAGCATCAAGGCCTTGGTGTGAAGC CTCGAATTCTTGTGGTAACCCGACTTATACCAAATGCTGGAGGGACAAAGTGCAACCAGGAGGTAGAACCTATTTTCGGTACACAGCACTCCCACATTGT TAGGGTCCCCTTCAAGACAGAGAAAGGGGTTCTCCCTCAGTGGGTTTCGCGTTTCGATGTATACCCTTACCTCGAGAGATTTTCTCAGGATGCTGCTGAT AAGGTCCTTGAACACATGGACAGTAAACCTGATCTCATCATTGGGAACTATAGTGATGGGAACTTGGTGGCATCTCTAATGGCTCGGAAACTCAGCATAA CTCTGGGGACTATTGCTCATGCTTTGGAGAAAACCAAGTATGAAGATTCTGATGTCAAATGGAAGGAATTGGATGCCAAGTACCACTTTTCCTGTCAATT CACAGCAGACATGATCGCGATGAATAGTGCTGATTTTATCATAACCAGCACGTACCAAGAAATTGCAGGAAGCAACGTTAGGCCAGGGCAGTATGAAAGC CATACGGCATTTACCATGCCAGGACTTTGCCGTGTTGTGTCAGGCATCAATGTCTTTGACCCAAAGTTCAACATTGCTTCCCCTGGGGCTGACCAATCTG TCTACTTCCCCTACACCGAGAAACAGAAGCGGCTAACCTCTTTTCATCCTGCCATTGAAGAACTGCTCTATAGCAACGAGGATAACCATGAGCATATTGG ATATCTAGCTGACAGGAAGAAACCAATTATCTTCTCCATGGCAAGACTGGATACAGTGAAAAACATTACGGGGCTGACAGAGTGGTTCGGGAAGAATACA AAGCTAAGAAACTTGGTGAATCTCGTTGTTGTAGCAGGATTCTTTGATCCATCCAAATCAAATGATAGAGAAGAAATTGCGGAGATCAAGAAGATGCATG CCTTGATAGAGAAATACCAACTTAAGAGCCAGTTCAGATGGATAGCAGCTCAAACTGACAGATACCGAAATGGGGAGCTCTACCGCTGCATTGCAGATAC AAAGGGAGCTTTTGTTCAGCCTGCACTTTATGAGGCTTTTGGCCTGACAGTCATTGAGGCAATGAACTGTGGATTGCCTACCTTTGCCACCAATCAAGGT GGCCCAGCAGAAATTCTTGTTGATGGGATCTCAGGATTCCACATTGATCCCAACAACGGAGATGAGTCTAGCAATAAGATAGCTGATTTCTTCGAGAAGT GCAAGACAGATGCTGAATATTGGAACAAGATGTCAGCAGCTGGTCTTCAACGCATCTATGAATGCTATACATGGAAGATTTATGCAAACAAAGTGTTGAA CATGGGATCTGTTTATGGATTTTGGAGGCAGACGAACAAGGAACAGAAGCTTGCGAAGCAAAGATATATCGAAGCCTTTTACAATCTCCAATTCAACAAT TTGGCAAAGAATGTTCCAATCCCAGAATTTGCATCATCCACGCAAACTTCATCAACTTCAAAAACTAAACCCCAGGAAACAGCACCAACTGCTGTAGTTG AATCTCAGCATTCACTTCCAACCCAGGAAGCCAAACCCAAAGTAGAGGAGGCCCCAGTCCTAATGCCTAAAACTCAGCTAACACAAAGAAGGACACAACC CCAGCAGCCTCAAAGCCAAAGGAATGGCGAAGAAAGCGTAGGGCAAAAGGACCTTGCACAACCAGGAAGCAGCAGACAAAGTAGCCGGAGGTGGTTGTTA TACATGATCGCTTCCCTTCTTATAGTATATTTCATCGGGAGCACACTGTATAGCTATCTCACATGA
AA sequence Show only first row Show all	>Potri.012G037200.1 pacid=42782779 polypeptide=Potri.012G037200.1.p locus=Potri.012G037200 ID=Potri.012G037200.1.v4.1 annot-version=v4.1 MASQTALQRSETITESMPEALRQSRYHMKKCFSRFVAPGKRLMKRQHLMDEVDESIQDKNERQKVLEGLLGYILSCTQEAAVIPPFVAFAVRPNPGFWEY VKVNAEDLSVEGISVSEYLQLKEMVFDEKWANNENALELDFGAMDFSTPRLTLSSSIGNGVNYMSKFMSSKLSGSSEAAKPLLDYLLALNHQGENLMINQ TLDTVAKLQEALIVAEVVVSAFPKDTPYQDFQQRLRELGFETGWGDTAERVKETMRLLSESLQAPYPMKLQLLFSRIPNMFNIVIFSPHGYFGQSDVLGL PDTGGQVVYILDQVRALEEELLLKIKHQGLGVKPRILVVTRLIPNAGGTKCNQEVEPIFGTQHSHIVRVPFKTEKGVLPQWVSRFDVYPYLERFSQDAAD KVLEHMDSKPDLIIGNYSDGNLVASLMARKLSITLGTIAHALEKTKYEDSDVKWKELDAKYHFSCQFTADMIAMNSADFIITSTYQEIAGSNVRPGQYES HTAFTMPGLCRVVSGINVFDPKFNIASPGADQSVYFPYTEKQKRLTSFHPAIEELLYSNEDNHEHIGYLADRKKPIIFSMARLDTVKNITGLTEWFGKNT KLRNLVNLVVVAGFFDPSKSNDREEIAEIKKMHALIEKYQLKSQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQG GPAEILVDGISGFHIDPNNGDESSNKIADFFEKCKTDAEYWNKMSAAGLQRIYECYTWKIYANKVLNMGSVYGFWRQTNKEQKLAKQRYIEAFYNLQFNN LAKNVPIPEFASSTQTSSTSKTKPQETAPTAVVESQHSLPTQEAKPKVEEAPVLMPKTQLTQRRTQPQQPQSQRNGEESVGQKDLAQPGSSRQSSRRWLL YMIASLLIVYFIGSTLYSYLT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.012G037200 [exp]	0	1
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G468800 [exp]	1.00	0.9848
AT4G33490			Eukaryotic aspartyl protease f...		Potri.007G099301 [exp]	2.82	0.9776
AT5G45540			Protein of unknown function (D...		Potri.015G059200 [exp]	3.00	0.9712
AT4G19090			Protein of unknown function (D...		Potri.012G018500 [exp]	3.87	0.9687
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.009G046600 [exp]	4.47	0.9521
AT1G68180			RING/U-box superfamily protein...		Potri.012G126700 [exp]	7.14	0.9345
AT3G17380			TRAF-like family protein (.1)		Potri.008G005650 [exp]	7.74	0.9686
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.001G252300 [exp]	9.48	0.9563
AT3G50180			Plant protein of unknown funct...		Potri.006G042873 [exp]	9.48	0.9624
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Potri.014G177200 [exp]	9.79	0.9549

Compare expression of checked genes

Potri.012G037200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.