Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73220 474 / 6e-163 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT1G79360 289 / 3e-91 2-Oct, ATOCT2 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) AT1G16390 279 / 2e-87 3-Oct, ATOCT3 organic cation/carnitine transporter 3 (.1) AT3G20660 239 / 6e-72 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT1G79410 236 / 6e-71 5-Oct, ATOCT5 organic cation/carnitine transporter5 (.1) AT1G16370 208 / 2e-60 6-Oct, ATOCT6 ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, organic cation/carnitine transporter 6 (.1) AT3G51490 50 / 5e-06 TMT3 tonoplast monosaccharide transporter3 (.1.2) AT1G20840 46 / 7e-05 AtTMT1, TMT1 tonoplast monosaccharide transporter1 (.1) AT3G13050 44 / 0.0002 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G029400 [exp] 760 / 0 AT1G73220 519 / 1e-180 organic cation/carnitine transporter1 (.1) Potri.010G174400 [exp] 271 / 2e-84 AT1G16390 627 / 0.0 organic cation/carnitine transporter 3 (.1) Potri.011G130533 [exp] 244 / 7e-74 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.016G039000 [exp] 240 / 3e-72 AT1G16390 444 / 7e-152 organic cation/carnitine transporter 3 (.1) Potri.010G174300 [exp] 227 / 1e-67 AT1G79360 447 / 5e-153 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) Potri.007G003000 [exp] 56 / 4e-08 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.014G000800 [exp] 49 / 1e-05 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.001G185300 [exp] 46 / 4e-05 AT1G79820 723 / 0.0 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Potri.002G006200 [exp] 47 / 5e-05 AT4G35300 904 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014801 [exp] 252 / 8e-77 AT3G20660 704 / 0.0 organic cation/carnitine transporter4 (.1) Lus10013330 [exp] 240 / 2e-72 AT3G20660 611 / 0.0 organic cation/carnitine transporter4 (.1) Lus10000286 [exp] 149 / 1e-40 AT1G16390 334 / 4e-112 organic cation/carnitine transporter 3 (.1) Lus10026758 [exp] 59 / 3e-09 AT3G20660 199 / 7e-60 organic cation/carnitine transporter4 (.1) Lus10025543 [exp] 51 / 6e-08 AT3G20660 127 / 8e-36 organic cation/carnitine transporter4 (.1) Lus10005217 [exp] 55 / 9e-08 AT3G20660 221 / 2e-76 organic cation/carnitine transporter4 (.1) Lus10033337 [exp] 49 / 6e-06 AT3G13050 508 / 2e-177 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10005825 [exp] 44 / 6e-06 AT1G16390 65 / 4e-14 organic cation/carnitine transporter 3 (.1) Lus10018992 [exp] 49 / 8e-06 AT3G13050 464 / 2e-160 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10037295 [exp] 45 / 0.0001 AT3G13050 363 / 1e-121 nicotinate transporter, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.012G037400.1 pacid=42783242 polypeptide=Potri.012G037400.1.p locus=Potri.012G037400 ID=Potri.012G037400.1.v4.1 annot-version=v4.1 ATGGAAGACCAGGCACAAAACCTTGTGCATGGAAACATACAGTTAGCAGAAAGAGTAGCACCACCACCGGCAACAAACCTAGAGCTGACAGTGGAGGAGG TGGTGGAGGAGTATGTAGGGTCCTTCGGGTGGTCACAGTTTTTACATGTGCTCTTGGTTTCACTAGCATGGATATTTGATTCACAGAACACATTGGTTAC CATCTTCAGTGATGCCCAACCATCTGCTTGGAGATGCATAAATAATTCATCGTCGTCTCTGTGCTTGTCTAGTAGCAGCAATGGTGATGCCTCTTCTGTT TGTGGACTGATGCCAGACACTTGGGAATGGGTCAGTGGCCATACAAGTTCCATTATTGCTGAATGGGGTCTCATTTGTGACCGCAGGTTCCTTGCTGCTA TACCTGCGTCACTGTTCTTTCTTGGTTCCCTCTTAGGTTCTGCATTTTTTGGCCACCTAGCAGACGCATCCCTGGGCCGAAAAAGAACAGTGCTACTCTC ATGTCTCTTAACCTCTGTCACTGCTTTCCTTACATCCCTCTCACCGAACATCTGGGTATATTCTTTGCTTCGATTCGCAAATGGTTTTTCTCGATCTGGA ATAGGAATCTGCTGTATTGTTCTAGCTACAGAAGTGGTCGGACGAAAAAGGCGGGGTCCTGTTAGTCAATTTGGCTTCTTTTTCTTTACTGCAGGATTTC TTTCCCTGCCTTTAATTGCCTATCATACAAGAACAAATTGGAGGAATTTATACAAGATTTTATCACTTCTCCCTCTAGCCTACTCTGTCTTGTTCTTCCC TTTTGTCTCAGAATCTCCGCGCTGGCTTCTTGTTAGGGGAAGGAGCGAAGAAGCCCTTGATGTTTTGAAAAATTTCGCAAGGCTTAATGGCAAGACACTG CCCGAAAACCTCTGTCTTGCCAATCCGTCAGCAGCGGGAGAGGGTGGTGAAAATGAAGCGTTGACAAAAAATTGCACAGAAGAAAGCCTGTGGAGGACAA AATGGGCTGCTAAAAGAATGATCACAGTAATGATAGCAGGTTTCGGAGTTGGTTTTGTTTACTATGGTGTTCAACTGAATATTGAGAACCTGAATTTCAA CCTTTATTTCTCTGTTGGACTCAACGCATTGATGGAGGTTCCTGCAGTTGTCATCGGTACTATACTCTTGGGCCTCACTGGCCGGCGACTTCTCTTCTCT CTCTCTGCTTTTCTAGCTGGGATTTCTTGCCTTCTTTGCATCCTTTTCGCTCATGGAAAACGCGCAAAGAACGCTGACAAATCCAGTACTGGGAATTGGG CTCAACTGGCTATTGAAGGAATTGGTTTCATGGCTGCTTCAGTAGCATTCGATGTCTTGTATGTTTATTGCGTTGAGCTATTCCCAACCAATGTGAGAAA CTTTGCTGTGTCGCAATCAAGACAAGCCTTGATGTTGGGTGCTTCAATAGCACCATTGCTGGTTGCTGCCGGTCGCTTAAGTCCATCTCTTTCTTTCCTC GTATTTGGGATCCTCTCCATTTTTAGTGGAGTTATAAGTTGGTGGCTACCTGAGACAAGAAACGCTCCTCTTTATGACACTTTGAAGCAACAAGAAGAAG ATGAGAAAAACAAAGTTGGGAGTCAAATTACTCAAGCATAG
AA sequence Show only first row Show all	>Potri.012G037400.1 pacid=42783242 polypeptide=Potri.012G037400.1.p locus=Potri.012G037400 ID=Potri.012G037400.1.v4.1 annot-version=v4.1 MEDQAQNLVHGNIQLAERVAPPPATNLELTVEEVVEEYVGSFGWSQFLHVLLVSLAWIFDSQNTLVTIFSDAQPSAWRCINNSSSSLCLSSSSNGDASSV CGLMPDTWEWVSGHTSSIIAEWGLICDRRFLAAIPASLFFLGSLLGSAFFGHLADASLGRKRTVLLSCLLTSVTAFLTSLSPNIWVYSLLRFANGFSRSG IGICCIVLATEVVGRKRRGPVSQFGFFFFTAGFLSLPLIAYHTRTNWRNLYKILSLLPLAYSVLFFPFVSESPRWLLVRGRSEEALDVLKNFARLNGKTL PENLCLANPSAAGEGGENEALTKNCTEESLWRTKWAAKRMITVMIAGFGVGFVYYGVQLNIENLNFNLYFSVGLNALMEVPAVVIGTILLGLTGRRLLFS LSAFLAGISCLLCILFAHGKRAKNADKSSTGNWAQLAIEGIGFMAASVAFDVLYVYCVELFPTNVRNFAVSQSRQALMLGASIAPLLVAAGRLSPSLSFL VFGILSIFSGVISWWLPETRNAPLYDTLKQQEEDEKNKVGSQITQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73220		1-Oct, ATOCT1	organic cation/carnitine trans...		Potri.012G037400 [exp]	0	1
AT3G52600		ATCWINV2	cell wall invertase 2 (.1.2)		Potri.016G077500 [exp]	1.41	0.8465	Pt-VI1.1
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.013G013900 [exp]	9.38	0.7397
AT1G14190			Glucose-methanol-choline (GMC)...		Potri.010G168200 [exp]	11.53	0.7959
AT3G61980			serine protease inhibitor, Kaz...		Potri.014G108700 [exp]	14.42	0.7820
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.017G003950 [exp]	15.49	0.7764
AT1G14820			Sec14p-like phosphatidylinosit...		Potri.004G046501 [exp]	29.08	0.7993
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Potri.019G028700 [exp]	35.63	0.8008
					Potri.001G426260 [exp]	37.78	0.7809
AT5G57810		TET15	tetraspanin15 (.1)		Potri.006G178000 [exp]	42.60	0.6795
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Potri.016G044100 [exp]	48.47	0.6498

Compare expression of checked genes

Potri.012G037400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.