Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17880 224 / 3e-76 ATBTF3 basic transcription factor 3 (.1) AT1G73230 224 / 3e-76 Nascent polypeptide-associated complex NAC (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G029800 [exp] 244 / 4e-84 AT1G17880 232 / 4e-79 basic transcription factor 3 (.1) Potri.004G078300 [exp] 211 / 3e-71 AT1G73230 197 / 2e-65 Nascent polypeptide-associated complex NAC (.1) Potri.017G141100 [exp] 209 / 2e-70 AT1G73230 196 / 3e-65 Nascent polypeptide-associated complex NAC (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031551 [exp] 214 / 5e-72 AT1G17880 255 / 2e-88 basic transcription factor 3 (.1) Lus10039661 [exp] 213 / 9e-72 AT1G17880 253 / 2e-87 basic transcription factor 3 (.1) Lus10015123 [exp] 212 / 2e-71 AT1G17880 253 / 1e-87 basic transcription factor 3 (.1) Lus10027180 [exp] 201 / 3e-67 AT1G17880 238 / 1e-81 basic transcription factor 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01849 [poplar] [flax] NAC NAC domain
Representative CDS sequence Show only first row Show all	>Potri.012G037900.1 pacid=42784275 polypeptide=Potri.012G037900.1.p locus=Potri.012G037900 ID=Potri.012G037900.1.v4.1 annot-version=v4.1 ATGGATCGGGAGAAGCTTATGAAGATGGCCACTGCAGTTCGCACTGGTGGAAAGGGTAGCGTGAGAAGGAAGAAGAAAGCTGTCCACAAGACTACTACTA CAGATGATAAAAGGCTTCAGAGCACCTTGAAGAGAATTGGAGTGAATGCTATACCTGCAATCGAGGAAGTCAACATATTCAAGGATGACATAGTCATCCA GTTTCTAAATCCCAAAGTGCAAGCGTCCATTGCTGCCAACACATGGGTTGTCAGTGGTTCCCCACAAACTAAGAAATTGCAAGATATTCTTCCACAAGTT CTTGGGCATTTAGGTCCTGATAACTTGGACAACCTGAAGAAATTGGCGGAACAGATCCAGAAGCAAGCACCTGGTGCAGGTGCTGCCGCAGCAGATGCGG CAGCACAGGACGATGATGATGACGTCCCGGATCTTGTGCCTGGAGAGACCTTTGAAGCTGCAGCAGAGGAGGATAAAGCTGCTGCTTCTTAG
AA sequence Show only first row Show all	>Potri.012G037900.1 pacid=42784275 polypeptide=Potri.012G037900.1.p locus=Potri.012G037900 ID=Potri.012G037900.1.v4.1 annot-version=v4.1 MDREKLMKMATAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDIVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPQV LGHLGPDNLDNLKKLAEQIQKQAPGAGAAAADAAAQDDDDDVPDLVPGETFEAAAEEDKAAAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73230			Nascent polypeptide-associated...		Potri.012G037900 [exp]	0	1
AT3G05560			Ribosomal L22e protein family ...		Potri.013G015300 [exp]	3.46	0.9507	Pt-RPL22.3
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.005G229000 [exp]	5.09	0.9329	APFI.2
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Potri.019G131900 [exp]	5.29	0.9447	Pt-RPL10.4
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Potri.005G211200 [exp]	5.56	0.9602
AT4G36130			Ribosomal protein L2 family (....		Potri.005G115700 [exp]	5.65	0.9534	RPL2.2
AT5G39850			Ribosomal protein S4 (.1)		Potri.007G056100 [exp]	8.12	0.9368
AT3G60770			Ribosomal protein S13/S15 (.1)		Potri.002G146800 [exp]	10.00	0.9494	RPS13.3
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Potri.012G066100 [exp]	10.95	0.9345	ATPC.1
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Potri.002G056200 [exp]	11.83	0.9435	Pt-RPS12.2
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.019G099000 [exp]	12.72	0.9459

Compare expression of checked genes

Potri.012G037900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.