Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73360 919 / 0 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 865 / 0 HD HDG12 homeodomain GLABROUS 12 (.1) AT4G04890 672 / 0 HD PDF2 protodermal factor 2 (.1) AT4G21750 658 / 0 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 654 / 0 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT4G00730 618 / 0 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT3G61150 617 / 0 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT5G46880 559 / 0 HD HDG5, HB-7 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1) AT3G03260 552 / 0 HD HDG8 homeodomain GLABROUS 8 (.1) AT5G52170 531 / 0 HD HDG7 homeodomain GLABROUS 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G034100 [exp] 1269 / 0 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.004G074800 [exp] 718 / 0 AT1G73360 640 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.002G230200 [exp] 686 / 0 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.014G152000 [exp] 685 / 0 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G020400 [exp] 681 / 0 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.014G075200 [exp] 677 / 0 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.011G025000 [exp] 669 / 0 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 666 / 0 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.003G096000 [exp] 647 / 0 AT5G46880 873 / 0.0 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031321 [exp] 1089 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10031892 [exp] 760 / 0 AT1G73360 618 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10039667 [exp] 686 / 0 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10027175 [exp] 680 / 0 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10006765 [exp] 666 / 0 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 663 / 0 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10007650 [exp] 659 / 0 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10036567 [exp] 599 / 0 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10027437 [exp] 547 / 0 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 539 / 0 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain
Representative CDS sequence Show only first row Show all	>Potri.012G038500.1 pacid=42783484 polypeptide=Potri.012G038500.1.p locus=Potri.012G038500 ID=Potri.012G038500.1.v4.1 annot-version=v4.1 ATGGAGTATGGCAGTGCTGGAGGAGGAAGTGGTGGTGGTGGTGGCGGGGACCATGATTCCTCTGACCCTCAAAGGAGGAAGAAGCGTTATCACCGCCACA CTGCTCACCAGATTCAGAAGTTGGAATCAATGTTTAAGGAGTTTCCACACCCAGATGAGAAACAAAGGTTACAGTTAAGTAGAGAGTTGGGTTTGGCACC AAGACAGATCAAGTTTTGGTTCCAAAACAGGAGGACCCAGATGAAGGCTCAACATGAAAGAGCAGATAACAGCTCTCTTAGAGCTGAGAATGATAAGATC CGGTGTGAGAATATAGCCATTAGAGAGGCGCTAAAGAATGTTATTTGCCCATCTTGTGGGGCGCCTCCTGTTACGGAGGATTCCTATTTTGATGAACAGA AATTAAGAATCGAGAATGCTCAATTGAAAGAAGAGCTTGATAGAGTTTCTAGCATTGCTGCTAAATACATAGGGAGACCAATTTCCCAACTCCCTCCGGT GCAACCTGTTCACATTTCTTCATTGGATTTATCAATGGGGAATTTTGGTGGCCAAGGTCTTGGTGGTCCTGCACTTGATCTTGATCTTGATCTTGATCTT ATCCCGACTAATTCAAATTTGGCTTTTCAACCGCCTGGCATTTCGGACATGGACAAGTCTCTCATGACTGATGTTGCTGCAAACGCAATGGAGGAACTGT TGAGGCTTTTGCAAGCTAATGAATCTTTATGGATGAAATCGTCCACTGATGGGAGAGATGTTCTTAATCTCGATAGCTACCAAAGGATCTTTCCAAGGGC TATGAGTCACTTAAAGAATCCCAATGTTCGAATTGAATCATCCCGAGATTCAGGTGTTGTTATCATGAATGGTGTAGCCTTGGTTGACATGTTTATGGAT TCAAACAAGTGGGTCGAATCATTTCCCACCATCGTGTCTGTGGCAAAGACCATTGAAGTCATTTCATCTGGAATGTTGGGTAATCACAGCGGTTCCTTGC AACTGATGTATGAAGAGTTGCAGGTGCTTTCACCCCTGGTTCCAACTCGGGAATTCTGTATCCTCCGGTATTGTCAGCAAATTGAGCAAGGCTTGTGGGC AATTGTTAGTGTTTCATATGATATTCCACAGTTTGCTTCCCAATTTCAATGTCACAGGCTTCCCTCTGGATGCTTGATTCAGGATATGCCTAATGGATAC TCAAAGGTTATTTGGGTGGAACATGTAGAGATAGAAGACAAAGCCCCAACCCACCAGCTTTATAGGGATCTCATTCACAGCGGTTTGGCCTTTGGAGCAG AACGGTGGCTTGCTACACTGCAAAGGATGTGTGAAAGGGTGGCATGTCAAATGGTGTCAGGAAGTTCAACTCGAGATCTTGGAGGAGTAATTCCATCACC AGAAGGTAAGAGAAGTATGATGAAACTTGGCCAGCGAATGGTCAGCAGTTTCTGTTCTAGCATAAGCACATCTAACAGCCACCGATGGAGCACACTATCC GGGTTGCATGACGTTGGAGTTCGAATTACACTCCATAAGAACACGGATCCTGGCCAACCTAATGGTGTAGTTCTAAGTGCGGCGACTACATTTTCGCTTC CAGTATCTCCTCAAAATGTCTTCAATTTCTTCAAGGATGAAAAGACTCGACCACAGTGGGATGTTCTCTCTAGTGGCAATGCAGTCCAAGAAGTTGCCCA TATTGCAAATGGGTCCCATCCTGGGAACTGCATATCTGTTCTTCGAGCCTACAACACTAGCCAGAACAATATGTTAATACTTCAAGAGAGCTGCATGGAC TCATCAGGTTCACTTGTAGTCTATTGCCCTGTCGATCTACCAGCCATCAACATAGCAATGAGTGGGGAGGACCCTTCCTATATACCTCTTCTGCCATCAG GATTCACCATTTCACCTGATGGTTATCCTGACCAAGGAGATGGTGCATCCACAAGCTCTAATACACAAGGACGCATGGCTAGGTCGAGTGGTTCACTAAT CACAGTAGCTTTTCAAATATTAGTTAGCAGCTTGCCATCTGCTAGACTGAACCTGGAGTCAGTGAATACCGTTAATAGCCTTATTGGAACCACCATCCAG CAAATTAAGGCTGCCTTGAGTTGTCCTGGTTCCTGA
AA sequence Show only first row Show all	>Potri.012G038500.1 pacid=42783484 polypeptide=Potri.012G038500.1.p locus=Potri.012G038500 ID=Potri.012G038500.1.v4.1 annot-version=v4.1 MEYGSAGGGSGGGGGGDHDSSDPQRRKKRYHRHTAHQIQKLESMFKEFPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSSLRAENDKI RCENIAIREALKNVICPSCGAPPVTEDSYFDEQKLRIENAQLKEELDRVSSIAAKYIGRPISQLPPVQPVHISSLDLSMGNFGGQGLGGPALDLDLDLDL IPTNSNLAFQPPGISDMDKSLMTDVAANAMEELLRLLQANESLWMKSSTDGRDVLNLDSYQRIFPRAMSHLKNPNVRIESSRDSGVVIMNGVALVDMFMD SNKWVESFPTIVSVAKTIEVISSGMLGNHSGSLQLMYEELQVLSPLVPTREFCILRYCQQIEQGLWAIVSVSYDIPQFASQFQCHRLPSGCLIQDMPNGY SKVIWVEHVEIEDKAPTHQLYRDLIHSGLAFGAERWLATLQRMCERVACQMVSGSSTRDLGGVIPSPEGKRSMMKLGQRMVSSFCSSISTSNSHRWSTLS GLHDVGVRITLHKNTDPGQPNGVVLSAATTFSLPVSPQNVFNFFKDEKTRPQWDVLSSGNAVQEVAHIANGSHPGNCISVLRAYNTSQNNMLILQESCMD SSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGYPDQGDGASTSSNTQGRMARSSGSLITVAFQILVSSLPSARLNLESVNTVNSLIGTTIQ QIKAALSCPGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Potri.012G038500 [exp]	0	1
AT4G15790			unknown protein		Potri.008G207500 [exp]	5.19	0.8950
AT2G19880			Nucleotide-diphospho-sugar tra...		Potri.006G164864 [exp]	11.48	0.8842
AT5G27670		HTA7	histone H2A 7 (.1)		Potri.005G026500 [exp]	18.97	0.8669	HTA914
AT5G12930			unknown protein		Potri.001G017100 [exp]	22.58	0.8821
AT1G64960		HEB1	hypersensitive to excess boron...		Potri.007G055400 [exp]	25.37	0.8805
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Potri.008G084800 [exp]	32.04	0.8533	DIM.2
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Potri.004G031300 [exp]	33.04	0.8540
AT4G22010		SKS4	SKU5 similar 4 (.1)		Potri.004G010100 [exp]	33.98	0.8128
AT3G48540			Cytidine/deoxycytidylate deami...		Potri.015G096400 [exp]	36.00	0.8265
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.002G080000 [exp]	40.03	0.8665

Compare expression of checked genes

Potri.012G038500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.