Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATCNGC19.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17700 818 / 0 ATCNGC20, CNBT1 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) AT3G17690 718 / 0 ATCNGC19 CYCLIC NUCLEOTIDE-GATED CHANNEL 19, cyclic nucleotide gated channel 19 (.1) AT1G19780 324 / 2e-99 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT5G57940 322 / 4e-99 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT4G30560 319 / 4e-98 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT2G23980 319 / 1e-97 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT2G28260 315 / 5e-97 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT2G24610 314 / 5e-96 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT1G15990 312 / 2e-95 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT5G53130 308 / 9e-94 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G034000 [exp] 1148 / 0 AT3G17700 905 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Potri.015G033900 [exp] 1046 / 0 AT3G17700 838 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Potri.018G097600 [exp] 332 / 2e-103 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.012G002200 [exp] 318 / 1e-97 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.018G106100 [exp] 315 / 4e-96 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.015G019100 [exp] 313 / 1e-95 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.009G010700 [exp] 311 / 5e-95 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.002G170000 [exp] 311 / 8e-95 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.001G043900 [exp] 310 / 2e-94 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031891 [exp] 873 / 0 AT3G17700 887 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Lus10031320 [exp] 851 / 0 AT3G17700 888 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Lus10021461 [exp] 326 / 1e-100 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10022155 [exp] 325 / 9e-100 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10037394 [exp] 316 / 3e-97 AT2G28260 983 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10036260 [exp] 321 / 5e-97 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10014925 [exp] 315 / 9e-97 AT5G53130 1031 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10015510 [exp] 309 / 5e-94 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10024073 [exp] 306 / 5e-93 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10041662 [exp] 305 / 2e-92 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Potri.012G038700.1 pacid=42783560 polypeptide=Potri.012G038700.1.p locus=Potri.012G038700 ID=Potri.012G038700.1.v4.1 annot-version=v4.1 ATGGCTGACCATGAAAAAGATGATGTAGCAATGCTGTCAGACACTCATCCAAAGTTAGTGGATGAAGAGGTGGATTCTCGATTTTCGCCATTTCTTTCCA GGACTCAAAGTGCATCAATTTCTATTCCTGTGAATTCCATGGAGTCATATGGTTTTGAAACCAATCTTGTTGGCTATACTGGTCCACTGCGTAGTGAAAG AAAAGCTCCACTGGTACAAATGAGCGGTCCTTTATATATCAACCGTAACACTGAAAACCTATTCCTGGCAAATCATGGTGTAACAGCTCACAAAAAGGTG GAACCCAAGCCAGAAAGATATCTATCTTTTAAAGGAATGGATCCGAATGACTGGGATGACATGTATACTACTACAAATGCCCACTTAATGAGGTCTGGGC AACTAGGGATGTGCAATGATCCTTACTGCACAACATGCCCATCGTTAATCCATTCCAAAGATTCCAGGTTTCGTAGTGTTCTCTATGGAGATGCTAAAGG TTGGGCAAGGAGATTCAATGATGTTATAAACTTGTATATTCCTAGAGTTATGAATCCTCATACTCAAGTGGTTCAGAAGTGGAACAAATTTTTTGTCATT TCGTGCTTGGTGGCAATTTTCGTCGATCCCTTGTTTTTCTTCCTCCTATGGGTGCAACAGGAAAACAATTGCATAGTTATTGACTGGCCATTGGCTAAAA CAATTGTGGTTTTTAGGAGTTTGACTGATCTCATCTACTTACTGAACATACTTCTTCAGTTTAGGTTAGCTTATGTTGCTCCTGAATCTAGAGTGGTTGG TGCTGGAGAGTTAGTTGACCATCCAAAGAAAATTGCTAAGCACTACCTTCGAGGATGTTTCTTTATTGACTTATTTGCAGTATTACCACTCCCGCAGATC ATTATATTAGTAGTCCTACCAAAGGGATTGGGAATCTCTGGAGCAAATAATGCCAAAAATCTTCTACGGGCAGCTGTTCTTGTCCAGTACATTCCAAGGC TGTGGAGGTTTACTCCTCTTCTCATTGGTCAGTCTCCAAGTGGCTTCATATTTGAGACAGCATTGGCAAACTTCTTTATAAATCTTTTCACCTATATACT GTCTGGTCACATCGTTGGGTCATGTTGGTATCTCTTTGGGTTGCAGAGGGTTAATCAATGTCTCCGTGATGCCTGCCATTATACTAGTTTTCGAGACGAG TGCATGGAATTTATAGATTGTGGAAGCGGGAATGCTAATGAAGAATACGGGTCTCATCTAAACTGGGCTAACTGGACACAGAATCCTAATGCAAGTAATT GTTTTCAAACGGGTGGTCCGCCAAATGGTTTTGATTATGGAATCTATACCAAAGCAGTCAACCTCACCGGAAAAAATATCATCATCAGATACATATATTC ATTGTTTTGGGGATTCCAGCAAATCAGTACTCTTGCTGGAAACCAAGTACCGAGCTATTTTGTTTGGGAAGTCCTCTTTACCATGGCAATCATTGGACTT GGTCTCTTGCTCTTTGCTTTTCTCATAGGAAACATCCAGAACTTTCTCCAATCTCTTGGTCGGAGGAGGTCAGAAATGTCATTAAGACGACGTGACGTTG AGCAGTGGATGAGACATCGGCGGTTGCCACAAGAACTAAGAAGGAGAGTGTTAGAAGCTGAACGGTATCATTGGGCTGCTACTAGAGGTGTAAATGAGGG AATGCTTATGGAGAATTTGCCGGAAGACCTTCAGAGGGATATAAGAAGGCATCTCTTCGAACTTGTCAGGAAAGTTTGGATTTTTAACCTGATGGATGAC CATGTCTTAGATGCTGTCCGTGAGAAATTAAAACAAAAAATATACATCAAGGGAAGTGAGATTTTTTATGTTGGTGGACTGGTTGAGAAGATGGTTTTTA TTGTGCGAGGAAAATTGGAAAGCATCGGTCATGATGGCACTGTAGTAGCCTTATGCGAAGGGAATGTTTGTGGTGAGGAACTTCTCACATGGTTTCTTGA GCATAGCTCAGTGTCCAAAGATGGAAGGAGAATCAAAACTCCTGGACAGCGTTTGATTAGTAGCAGGACAGTAAGGTGCCTAACAAATGTAGAAGCATTT TCACTCAGTGCCGCAGACCTTCAAGAAGTCACCAGCGTTTTTGCAAGAAACTTGCGCCATCCACTCGTCCAAGGAGCCATAAGGTATCAATCTCCATACT GGAGAGCCCGTGCTGCTACCCTCATTCAAGTTGCCTGGAGATATCGGCAGAAACGTCTGAAGCATAGCAAGAGCTCTCAATCAAACCATTCTTCAAACTC GAGGGTTTAG
AA sequence Show only first row Show all	>Potri.012G038700.1 pacid=42783560 polypeptide=Potri.012G038700.1.p locus=Potri.012G038700 ID=Potri.012G038700.1.v4.1 annot-version=v4.1 MADHEKDDVAMLSDTHPKLVDEEVDSRFSPFLSRTQSASISIPVNSMESYGFETNLVGYTGPLRSERKAPLVQMSGPLYINRNTENLFLANHGVTAHKKV EPKPERYLSFKGMDPNDWDDMYTTTNAHLMRSGQLGMCNDPYCTTCPSLIHSKDSRFRSVLYGDAKGWARRFNDVINLYIPRVMNPHTQVVQKWNKFFVI SCLVAIFVDPLFFFLLWVQQENNCIVIDWPLAKTIVVFRSLTDLIYLLNILLQFRLAYVAPESRVVGAGELVDHPKKIAKHYLRGCFFIDLFAVLPLPQI IILVVLPKGLGISGANNAKNLLRAAVLVQYIPRLWRFTPLLIGQSPSGFIFETALANFFINLFTYILSGHIVGSCWYLFGLQRVNQCLRDACHYTSFRDE CMEFIDCGSGNANEEYGSHLNWANWTQNPNASNCFQTGGPPNGFDYGIYTKAVNLTGKNIIIRYIYSLFWGFQQISTLAGNQVPSYFVWEVLFTMAIIGL GLLLFAFLIGNIQNFLQSLGRRRSEMSLRRRDVEQWMRHRRLPQELRRRVLEAERYHWAATRGVNEGMLMENLPEDLQRDIRRHLFELVRKVWIFNLMDD HVLDAVREKLKQKIYIKGSEIFYVGGLVEKMVFIVRGKLESIGHDGTVVALCEGNVCGEELLTWFLEHSSVSKDGRRIKTPGQRLISSRTVRCLTNVEAF SLSAADLQEVTSVFARNLRHPLVQGAIRYQSPYWRARAATLIQVAWRYRQKRLKHSKSSQSNHSSNSRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G038700 [exp]	0	1	Pt-ATCNGC19.3
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.016G006000 [exp]	1.41	0.9291
AT4G13630			Protein of unknown function, D...		Potri.017G055100 [exp]	1.41	0.9360
AT2G19130			S-locus lectin protein kinase ...		Potri.019G119200 [exp]	1.73	0.9191
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.002G056500 [exp]	4.00	0.9190
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.001G381700 [exp]	4.89	0.9082	Pt-SRG1.3
AT5G12200		PYD2	pyrimidine 2 (.1)		Potri.009G067700 [exp]	6.48	0.8886
AT1G34300			lectin protein kinase family p...		Potri.010G103300 [exp]	6.70	0.9175
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Potri.001G285800 [exp]	7.21	0.8939
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.012G019900 [exp]	8.12	0.8882
AT4G14090			UDP-Glycosyltransferase superf...		Potri.017G101800 [exp]	8.48	0.9073

Compare expression of checked genes

Potri.012G038700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.