Plant FIBer expression Database

Potri.012G038900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48420 588 / 0 DCD, ATACD1, ACD1, D-CDES A. THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, D-cysteine desulfhydrase (.1)
AT3G26115 82 / 7e-17 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G051200
[exp]
71 / 4e-13 AT3G26115 392 / 1e-133 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031898
[exp]
648 / 0 AT1G48420 584 / 0.0 A. THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, D-cysteine desulfhydrase (.1)
Lus10031325
[exp]
551 / 0 AT1G48420 497 / 2e-176 A. THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, D-cysteine desulfhydrase (.1)
Lus10036952
[exp]
82 / 2e-16 AT3G26115 452 / 7e-158 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF00291 PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence
>Potri.012G038900.2 pacid=42783866 polypeptide=Potri.012G038900.2.p locus=Potri.012G038900 ID=Potri.012G038900.2.v4.1 annot-version=v4.1
ATGCTCTGCTACAGGTGCTTCTACTCTTCCCCTAATTACTCTCTCATTCCTTCTCCAACCATCAGCAACAAAAACAAGAACTTGCTCTTCAAGACCTTTC
CTTTTTTGTCCTCTCAAAAACCGAACTTCACTTCATCACTCTATTGCTCTCACTCTCCCTCTCAAATAATGGATTTGGACAACAAGAAGGATCAAGAATC
AAGAAGTTTATTTGATTTCTTAAGCCAAAAAGCTTATACACCACCTTCATGGGCTTCCCTTTTGAATCCAATCCCTTCTCATATCTTCTCTCTTGGTCAC
CTCCCTACTCCTATTCACAAATGGAACCTTCCGAATTTGCCCACCAACACTGAAGTCTATTTAAAGAGAGATGACTTGTCTGGGATGCAACTGAGTGGTA
ACAAAGTGAGAAAGTTGGAGTTTTTAATGGCTGATGCTGTGGCTCAAGGTGCTGACTGTATTATTACCATTGGTGGTATTCAAAGTAATCACTGTCGTGC
CACTGCTGTTGCTGCTAAGTACCTTAATCTTGATTGTTACCTCATACTTCGTGCCTCAAAGGTTGTTGTGGACAAAGATCCAGGATTGACAGGAAATCTC
TTGGTGGAGAGATTAGTTGGGGCTAATGTTCAACTTATTTCAAAAGAAGAATATGCACAAATTGGGAGTGTGAATCTCACCAATGATTTAAAAGAAAAGT
TGGTGAAGGAAGGGAGAAAACCATATGTTATTCCTGTTGGTGGATCAAACTCCTTAGGAACCTGGGGTTACATTGAAGCTATCAGAGAAATTGAGCAGCA
AGTTCAGGCTACTACAGGCAGAATAAAATTTGATGATATTGTTGTAGCATGTGGCAGTGGAGGAACAATTGCTGGTCTGTCATTGGGATCATGGCTGGGA
ACATTAAAGGCAAAAGTTCATGCATTCGCTGTTTGTGATGATCCTGATTACTTCTACAACTTTGTTCAAGACCTAATTGATGGACTCAAAGCAGGTGTTG
ACTCGCATGATATTGTAAACATCCAAAATGCCAAGGGTCTGGGCTATGCAATTAATACATCTGAGGAGCTTAAATTTGTTAAGGAAATTGCTACCGCTAC
AGGGGTCGTTCTTGATCCAGTTTACAGTGGGAAAGCTGCTTATGGGATGATGAAAGACATGGCAGAAAATCCAAAGAATTGGGAAGGGAGAAAGGTCCTC
TTCATCCATACAGGGGGGCTCCTAGGATTGTTTGACAAAGTAGACCAGATGTCTTCATTGGTCGAAAATTGGGGTCGGATGGAAGTCCAGGAATCTGTTC
CAAGAAAGGATGGTATAGGAAAAATGTTCTAG
AA sequence
>Potri.012G038900.2 pacid=42783866 polypeptide=Potri.012G038900.2.p locus=Potri.012G038900 ID=Potri.012G038900.2.v4.1 annot-version=v4.1
MLCYRCFYSSPNYSLIPSPTISNKNKNLLFKTFPFLSSQKPNFTSSLYCSHSPSQIMDLDNKKDQESRSLFDFLSQKAYTPPSWASLLNPIPSHIFSLGH
LPTPIHKWNLPNLPTNTEVYLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRATAVAAKYLNLDCYLILRASKVVVDKDPGLTGNL
LVERLVGANVQLISKEEYAQIGSVNLTNDLKEKLVKEGRKPYVIPVGGSNSLGTWGYIEAIREIEQQVQATTGRIKFDDIVVACGSGGTIAGLSLGSWLG
TLKAKVHAFAVCDDPDYFYNFVQDLIDGLKAGVDSHDIVNIQNAKGLGYAINTSEELKFVKEIATATGVVLDPVYSGKAAYGMMKDMAENPKNWEGRKVL
FIHTGGLLGLFDKVDQMSSLVENWGRMEVQESVPRKDGIGKMF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G48420 DCD, ATACD1, AC... A. THALIANA 1-AMINOCYCLOPROPAN... Potri.012G038900
[exp]
0 1
AT5G06060 NAD(P)-binding Rossmann-fold s... Potri.008G059100
[exp]
4.89 0.8686
AT4G38460 GGR geranylgeranyl reductase (.1) Potri.004G179628
[exp]
9.53 0.8593
AT3G26115 Pyridoxal-5'-phosphate-depende... Potri.010G051200
[exp]
9.89 0.8718
AT5G06130 chaperone protein dnaJ-related... Potri.006G210500
[exp]
13.03 0.8680
AT5G02790 GSTL3 Glutathione transferase L3, Gl... Potri.006G133500
[exp]
16.52 0.8218
AT5G60160 Zn-dependent exopeptidases sup... Potri.015G092700
[exp]
20.19 0.8118
AT1G65770 AMR1 ascorbic acid mannose pathway ... Potri.005G105400
[exp]
26.73 0.8520
AT5G61760 ATIPK2BETA ARABIDOPSIS THALIANA INOSITOL ... Potri.012G111400
[exp]
32.12 0.7948
AT1G08980 ATTOC64-I, ATAM... ARABIDOPSIS THALIANA TRANSLOCO... Potri.013G024100
[exp]
35.69 0.8512
AT5G47840 AMK2 adenosine monophosphate kinase... Potri.013G103400
[exp]
41.64 0.8667

Potri.012G038900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.