Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76810 1096 / 0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76820 1012 / 0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76720 952 / 0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G21160 928 / 0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT2G27700 690 / 0 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (.1.2) AT1G17220 114 / 3e-25 FUG1 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) AT4G11160 109 / 5e-24 Translation initiation factor 2, small GTP-binding protein (.1) AT5G08650 54 / 7e-07 Small GTP-binding protein (.1) AT3G22980 52 / 4e-06 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G45332 50 / 1e-05 Translation elongation factor EFG/EF2 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103600 [exp] 1343 / 0 AT1G76810 976 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.011G132100 [exp] 142 / 4e-38 AT1G76820 145 / 5e-40 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.011G132300 [exp] 142 / 4e-38 AT1G76820 145 / 5e-40 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.001G436300 [exp] 119 / 6e-27 AT1G17220 1076 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Potri.011G140100 [exp] 118 / 2e-26 AT1G17220 1160 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Potri.001G095500 [exp] 103 / 3e-22 AT4G11160 828 / 0.0 Translation initiation factor 2, small GTP-binding protein (.1) Potri.001G305300 [exp] 56 / 2e-07 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.017G079800 [exp] 50 / 9e-06 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.001G123600 [exp] 48 / 6e-05 AT1G45332 1337 / 0.0 Translation elongation factor EFG/EF2 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012856 [exp] 1099 / 0 AT1G76820 1211 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10030500 [exp] 1092 / 0 AT1G76810 1217 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10040355 [exp] 281 / 4e-87 AT1G76820 272 / 4e-85 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10023474 [exp] 225 / 2e-68 AT1G76810 224 / 5e-69 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10013713 [exp] 119 / 1e-26 AT1G17220 1267 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Lus10005581 [exp] 116 / 6e-26 AT1G17220 1080 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Lus10033933 [exp] 88 / 3e-17 AT4G11160 927 / 0.0 Translation initiation factor 2, small GTP-binding protein (.1) Lus10040356 [exp] 56 / 7e-09 AT1G76810 56 / 2e-10 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10035968 [exp] 57 / 7e-08 AT5G08650 1102 / 0.0 Small GTP-binding protein (.1) Lus10025694 [exp] 53 / 2e-06 AT5G08650 1009 / 0.0 Small GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [poplar] [flax] PF11987 [poplar] [flax] IF-2 Translation-initiation factor 2
Representative CDS sequence Show only first row Show all	>Potri.012G039200.8 pacid=42783151 polypeptide=Potri.012G039200.8.p locus=Potri.012G039200 ID=Potri.012G039200.8.v4.1 annot-version=v4.1 ATGGGTAGAAAGAAGCCAGCCGCGCGTGATGAGGAGAACGCTCCTGCGGGTGGTGGAGGGAAGTCGAAGAAGAAGGGGTTGATGATTGATGATGATGAGT ATTCGGTTGGGACCGAGTTGTCCGAGGAGACACAGGTTCAGGAGGAGAAAGTTGTGATTACTGGGAAAAAGAAGGGTAAGAAGGGGAATCAGAAGGATTT TAAGGAAGAGAAGGGGGATGGTGAGGAGGAGGAAGTGCCGGAGGTTGTGTTTGCTGGGAAAAAGAAGTCGAAAGGGAAGAAGAGTGGTGCTGGTGGGAAT GCTGGTTTTTCATCGTCCAATTTTGCCTTATTGGGAGGTGATGAGGATGATGATGGTAATGATGATGACGATGAGAGATCGGAATTGACTGGCGAGAAAG ATAGCGAGGAGGAGGATGAGCCTGTGGCAAGTTTTAAAGGGAAGACAAAGGGTAAGGGGGATAAGGGGAGTGATGGTGGTAGTTTGTTTAGTGCATCGGC TTTTGATGCTATTGACGATGGTGAGATTGATGGAGAGGTAGTGGATAAAGAAGAGGATGATGATGACAATGACGTGCCTGTTATTGAATTTACAGGAAAG AAGAAGAAGTCGGCAAAGGGTGGTAAGAAGGATGCTGGGAGTGTGTTTTTGGCAGCGAGTTTCGATGGGTTAGATGAGAATGAGGATGACGAGAAGAAAG ATGAGGATGAGGATTTTGGTGCGATTACTTTCTCTGGTAAGAAGAAGAAGTCTTCCAAGTCTAGCAAAAAGAGTGGTAGTAATAAATTTAGTGCGGCATT GCTTGATGATGAGAATGATGAAGAGACTTCTGTGTCTGAATCAGTGAAAACCAATGATGATGTGATTGGCGTTGAGGATGAAGATGAGTCGGTGGTTGCA TTTACTGGTAAGAAGAAGAAGTCTTCTAAGAAGAAGGGGGCTAGTAATCATGTTTTTTCTGCATTGGGTGGAGAGGATGAGAGAGAAGTTGCTGAGATGG TTGAACCAGAAGAACCTAATATTGTCGAAGCTAATGATAGTAAGGTTACTAAGAGTGAAGCGGTGGCAGAGACTTCAAAGAATAAGAAGAAGAAGAAGGG TAAGAGTGGAAGGACTGCTCAAGAAGAGGATGATTTGGATAAGATTCTTGCGGAGCTAGGTGGGGGGGCATCTACTTTGAAACCTTCTGAATCACCTCCA CAAGAGGAGAAACTTAATGTTCAGCCTGAACCAGTTGCAGTGCCAGATGCTCTGGTCGAGAAGGAGGGTGAAGAAGAAAAAGAAGAGTCTGCTGCTGCAA AGAAGAAGAAGAAGAAGAAAGAGAAGGAGAAAGAGAAGAAGGTAGCTGCTGCCGCTGCTGCAGCGGCAAAGGAAGAAAAGCTGGAAGAAGCAAAAGCTGA AACAAGTGAGCCAAAAAAGACAGATGCAAAGGGTAAAGCTGCTGAAAAGAAGCTTCCTAAGCATGTTAGAGAGATGCAAGAGGCACTTGCTAGGAGAAAA GAAATGGAGGAGAGAAAAGCAAAGGAGGAAGAGGAGAAGAGGAGGAAGGAAGAAGAGGAAAGACTAAGGCAAGAAGAACTTGAGAGGCAAGCAGAAGAGG CTAGGCGTAGGAAGAAGGAAAGGGAAAAGGAGAAACTCTTGAAGAAGAAACAGGAAGGCAAGCTTCTAACAGGGAAGCAGAAGGAAGAACAACGGCGGCT AGAGGCTATGCGGAATCAAATACTTGCTAATGCAGGCATCACTGTCCCTACTGCAGACAGAGATAATGCACCTACAAAACGGCCCAGGTACCAGACTAAG AAGTCAAAACCAGCTCACCATCAAGCAAATGGTATCAAGATAGAGGAACATGTAGAAGCTAAAGGAAAAGAGCAAGAGGAGCAGGAAGAAGTGCATGAGG TGGAAACCGTAGAATTAGAGAAGGCTGAACCAGTGGAGGAAGAGAAAACAGAAGTTGCTAGTGTACCTGAGGAGAATGGAATGGAGGAAGATGACGATGA TGAGGAATGGGATGCAAAGAGCTGGGATGATGTAAATCTTAATGTTAAGGGTGCATTTGATGATGAGGAGGATTCTGAGCCTGAACCTGTCTTGAAGAAG GAAACAAAGAGTTCTGTTCCAGCTTCTCGCGGTGCAGCCCCTCCTTCAGATGCCAAGCCTGCAATTGCAGTCAGAAAACCTGTTACATCACAGCCAATGG ATTCTCGTGATGTTGAAAATAAGAAAATTCAGACTGAGGTTGAAGTTTCTGACAAAAACAGGAAGAAAGACGCTGCTGTGAAAAATAAAGGAGCAGTTTC AGATGCCATCCCTAAACAGGGTGAAGAGAACCTGCGCTCTCCAATTTGCTGTATTATGGGCCATGTTGATACTGGTAAAACCAAGCTGTTGGATTGTATT CGAGGCACCAATGTGCAAGAAGGTGAGGCTGGGGGTATCACGCAACAGATTGGTGCAACATACTTTCCTGCTGAGAACATACGGGAAAGAACAAAGGAAT TGAAAGCTGATGCAAAACTAAATGTCCCTGGTCTGTTGGTTATTGATACCCCTGGCCATGAATCTTTTACTAATCTACGGTCACGCGGTTCAGGTTTATG TGACATTGCTATTCTGGTTGTTGACATAATGCATGGCTTGGAGCCGCAAACCATAGAATCACTCAATCTTTTGAGGATGAGGAATACAGAATTTATTGTT GCATTAAATAAGGTGGACAGACTCTATGCATGGAAAGCACAACGTAATGCACCTATTAGAAAGGCATTGAAGCAGCAATCAAAAGATGTGCAAAATGAAT TTGACAGGAGGCTCATGGAGGTCATAACTCAGTTCAAGGAGCAAGGATTAAATACTGAATTGTACTATAAAAACAAGGACATGGGAGAAACTTTTAATAT CGTACCGACAAGTGCAATTAGTGGAGAAGGCATTCCTGATTTGTTACTGCTACTGATCCAATGGTCTCAGAAAACTATGATTGAGAAACTCACATTCAGA AATGAAGTGCAGTGTACGGTATTGGAGGTTAAGGTTATTGAAGGCCATGGAACAACAATTGATGTTGTGTTGGTTAATGGTGTGCTCCATGAAGGCGATC AAATCGTGGTGTGCGGCTTACAGGGTCCCATTGTTACCACAATTCGGGCTTTGCTGACACCCCACCCGATGAAGGAACTCCGAGTTAAGGGGACATATCT TCACCATAAAGAAATCAAGGCTGCACAGGGTATCAAGATCACTGGGCAGGGCCTTGAACATGCTATTGCTGGAACTGGTTTATATGTGGTTGGGCGTGAT GATGATGTGGAAGATGTCAAGGAATCCGCAATGGAAGACATGAAGTCAGTAATGAGTCGGATTGATAAAACTGGCGAGGGAGTTTACGTACAAGCATCTA CCCTTGGGTCACTGGAAGCATTGCTGGAGTTCTTGAAGTCACCGGCAGTAAGCATTCCTGTTAGCGGTATAGGCATTGGCCCAGTACATAAAAAGGATGT CATGAAGTCCAGTGTAATGCTTGAGAAGAAAAAGGAGTATGCCACCATTTTGGCATTTGATGTTAAAGTGACACCTGAGGCTCGGGAACTTGCAGATGAA CTAGGAGTAAAGATTTTCATCGCTGATATCATTTATCACCTATTTGATCAATTCAAGGCTTACATTCAGAATCTGAAGGAGGAAAAGAAGAGGGAAGCCG CTGATGAAGCTGTTTTCCCATGTGTTCTTGAGATAATACCAGAGTGCATTTTCAACAAGAAAGATCCTATCATCTTGGGGGTTGATGTTCTTGAGGGCAT ACTCAAGGTTGGGACACCACTTTGTGTTCCACAAAAAGAATACATTGACATTGGCCGAATTGCTTCCATTGAGTTCAACAAAAAATCAGTGGATTATGCA AAGAAAGGCCAGAAGGTGGCCATTAAGATTGTGGGAACCAATGCGGAGGAGCAGCAAAAAATGCATGGCAGGCATTTTGACAACGAAGATCAACTAGTCA GCCACATTACAAGAAGGTCAATTGATATTCTTAAAGTTAATTACCGGGATGATCTGTCAATTGAAGATTGGAGGCTGGTTGTTAAATTGAAGACCCTTTT TAAGATACAGTAA
AA sequence Show only first row Show all	>Potri.012G039200.8 pacid=42783151 polypeptide=Potri.012G039200.8.p locus=Potri.012G039200 ID=Potri.012G039200.8.v4.1 annot-version=v4.1 MGRKKPAARDEENAPAGGGGKSKKKGLMIDDDEYSVGTELSEETQVQEEKVVITGKKKGKKGNQKDFKEEKGDGEEEEVPEVVFAGKKKSKGKKSGAGGN AGFSSSNFALLGGDEDDDGNDDDDERSELTGEKDSEEEDEPVASFKGKTKGKGDKGSDGGSLFSASAFDAIDDGEIDGEVVDKEEDDDDNDVPVIEFTGK KKKSAKGGKKDAGSVFLAASFDGLDENEDDEKKDEDEDFGAITFSGKKKKSSKSSKKSGSNKFSAALLDDENDEETSVSESVKTNDDVIGVEDEDESVVA FTGKKKKSSKKKGASNHVFSALGGEDEREVAEMVEPEEPNIVEANDSKVTKSEAVAETSKNKKKKKGKSGRTAQEEDDLDKILAELGGGASTLKPSESPP QEEKLNVQPEPVAVPDALVEKEGEEEKEESAAAKKKKKKKEKEKEKKVAAAAAAAAKEEKLEEAKAETSEPKKTDAKGKAAEKKLPKHVREMQEALARRK EMEERKAKEEEEKRRKEEEERLRQEELERQAEEARRRKKEREKEKLLKKKQEGKLLTGKQKEEQRRLEAMRNQILANAGITVPTADRDNAPTKRPRYQTK KSKPAHHQANGIKIEEHVEAKGKEQEEQEEVHEVETVELEKAEPVEEEKTEVASVPEENGMEEDDDDEEWDAKSWDDVNLNVKGAFDDEEDSEPEPVLKK ETKSSVPASRGAAPPSDAKPAIAVRKPVTSQPMDSRDVENKKIQTEVEVSDKNRKKDAAVKNKGAVSDAIPKQGEENLRSPICCIMGHVDTGKTKLLDCI RGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLNVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLRMRNTEFIV ALNKVDRLYAWKAQRNAPIRKALKQQSKDVQNEFDRRLMEVITQFKEQGLNTELYYKNKDMGETFNIVPTSAISGEGIPDLLLLLIQWSQKTMIEKLTFR NEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTGLYVVGRD DDVEDVKESAMEDMKSVMSRIDKTGEGVYVQASTLGSLEALLEFLKSPAVSIPVSGIGIGPVHKKDVMKSSVMLEKKKEYATILAFDVKVTPEARELADE LGVKIFIADIIYHLFDQFKAYIQNLKEEKKREAADEAVFPCVLEIIPECIFNKKDPIILGVDVLEGILKVGTPLCVPQKEYIDIGRIASIEFNKKSVDYA KKGQKVAIKIVGTNAEEQQKMHGRHFDNEDQLVSHITRRSIDILKVNYRDDLSIEDWRLVVKLKTLFKIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76810			eukaryotic translation initiat...		Potri.012G039200 [exp]	0	1
AT5G41020	MYB		myb family transcription facto...		Potri.015G095000 [exp]	1.00	0.9742
AT5G48610			unknown protein		Potri.017G058701 [exp]	2.44	0.9662
AT5G08450			unknown protein		Potri.018G145542 [exp]	2.82	0.9472
AT5G43490			unknown protein		Potri.017G058500 [exp]	3.00	0.9655
AT4G33740			unknown protein		Potri.001G288800 [exp]	3.16	0.9516
AT5G43490			unknown protein		Potri.001G319500 [exp]	4.00	0.9585
AT5G41020	MYB		myb family transcription facto...		Potri.003G168900 [exp]	4.24	0.9460
AT5G43490			unknown protein		Potri.017G058600 [exp]	5.91	0.9473
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Potri.010G132600 [exp]	6.92	0.9495
AT3G05670			RING/U-box protein (.1)		Potri.013G011400 [exp]	7.41	0.9360

Compare expression of checked genes

Potri.012G039200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.