Plant FIBer expression Database

Potri.012G039300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G22110 743 / 0 DPB2, CYL2, DBP2, ATDPB2 CYCLOPS 2, DNA polymerase epsilon subunit B2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026361
[exp]
825 / 0 AT5G22110 733 / 0.0 CYCLOPS 2, DNA polymerase epsilon subunit B2 (.1)
Lus10042296
[exp]
754 / 0 AT5G22110 662 / 0.0 CYCLOPS 2, DNA polymerase epsilon subunit B2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF04042 DNA_pol_E_B DNA polymerase alpha/epsilon subunit B
Representative CDS sequence
>Potri.012G039300.1 pacid=42784278 polypeptide=Potri.012G039300.1.p locus=Potri.012G039300 ID=Potri.012G039300.1.v4.1 annot-version=v4.1
ATGAGCAGCACAGTTCGAAAACTAATACAAAAGAAATTCAAAATAAGAGGCTACACTCTCAAAATCGACGCTCTCGATCAAATCCTCTCCTTCACCAACC
GCTTTCTCGGCGCCGAAGACGAAGCTCTCGATCTCCTCCTCGATCACCTCCAATCCCAATCCCAGAAATTGGGAGTGAGATCTTCGATCCTTGATAAAGA
ACCAGTGAGTCGTGCTATAACTGCTTTATTGGAAGCTGATGATGCTGTTGATGAAGATTTCATAGCTAACGGTGCCGTTTCGAGTTCGACTTCTGCTATT
CGTGTTATTGATGCTTTTTTGATACCTAAATTTCGCTATGATCCAATCAAAAAGCAGTTTCATGAACATACAGGGGGGTTGCATATACATGGTGATGCTT
CAGCAAAAGCTGCTCTTTATAAAGATAGGTTTTTGTTATTGTATCAACGAGTTTTACGCGATTCACATTTTTCCAAGCCTGCTTTTCATACTGAGATGTC
GCATTATGGAAGTTGTGAGATAGCTCCAATTCAGTCTCTGGTGGGGCAAATGGGGAGAAGATGGGTGATGGGTGTGATATCTCAGTTGGAGGATGGACAT
TTTTACTTGGAAGATCTTACTGCTTCGGTGGAAATTGACTTGTCTAAAGCAAAAGTAACTACAGGATTTTTATCAGAGAACACAATAGTTGTTGCAGAAG
GTGAGATGCTCGTGAATGGTATTTACCAGGTAATTACTTGTGGGTTTCCTCCATTAGAGGAAAGGGACAAGTCTCTCAAATCACTTGCGCAGCATGATTT
CTTTGGTGGTGGTACATTAACAAAAGAGGAGACTCTCAGACTTGCAGAGTTGGAAAAGCGATCTCTAAATGACATGTTTGTCATACTCTCTGACATCTGG
GTAGACAGTGAAGAGGCTATGGGAAAGCTGGAGACCGTTCTTGATGGTTTTGAGAGTCAAGAGGTGGTTCCTTCCTTATTTGTTTTCATGGGGAACTTCT
GTTCTCACCCATGCAACCTTTCCTTTCACTCATTCTCAAGCCTTAGATCACAGTTTGGTAAGCTAGGGCAAATGATTGGAGCCCATGAACGGCTAAAAGA
GCATAGTCGGTTTATGTTTATTCCTGGTCCAGAGGACGCAGGCCCGTCCACGGTTCTACCGAGATGTCCTTTACCAAAGTATTTAACTGAAGAGCTTCAG
AAGCACATTCCTAATGCCATATTTGCAAGCAATCCATGCAGAGTCAAGTTCTATACCCAAGAAATTGTATTCTTTCGTCATGATCTGCTGTATAGAATGC
GTCGTTCATGCCTGATGCCTCCTTCTACTGAAGAGACTGATGATCCTTTTGAGCATCTTGTTGCTACCATAACCCATCAAAGTCATCTATGCCCACTGCC
TCTTATTGTTCAACCAATTATTTGGAATTATGATCATTGTCTACATCTTTATCCATCTCCACATACGATAGTTTTAGGCGACAGAAGTGAGCAGAAGGCA
TTCAAATACACAGGAATCACTTGTTTCAACCCTGGATCCTTCTCAAATGACAGCACTTTTGTAGCATATCGTCCTTGCACCCAGGAAGTCGAGTTGTCAG
CCTTGTGA
AA sequence
>Potri.012G039300.1 pacid=42784278 polypeptide=Potri.012G039300.1.p locus=Potri.012G039300 ID=Potri.012G039300.1.v4.1 annot-version=v4.1
MSSTVRKLIQKKFKIRGYTLKIDALDQILSFTNRFLGAEDEALDLLLDHLQSQSQKLGVRSSILDKEPVSRAITALLEADDAVDEDFIANGAVSSSTSAI
RVIDAFLIPKFRYDPIKKQFHEHTGGLHIHGDASAKAALYKDRFLLLYQRVLRDSHFSKPAFHTEMSHYGSCEIAPIQSLVGQMGRRWVMGVISQLEDGH
FYLEDLTASVEIDLSKAKVTTGFLSENTIVVAEGEMLVNGIYQVITCGFPPLEERDKSLKSLAQHDFFGGGTLTKEETLRLAELEKRSLNDMFVILSDIW
VDSEEAMGKLETVLDGFESQEVVPSLFVFMGNFCSHPCNLSFHSFSSLRSQFGKLGQMIGAHERLKEHSRFMFIPGPEDAGPSTVLPRCPLPKYLTEELQ
KHIPNAIFASNPCRVKFYTQEIVFFRHDLLYRMRRSCLMPPSTEETDDPFEHLVATITHQSHLCPLPLIVQPIIWNYDHCLHLYPSPHTIVLGDRSEQKA
FKYTGITCFNPGSFSNDSTFVAYRPCTQEVELSAL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G22110 DPB2, CYL2, DBP... CYCLOPS 2, DNA polymerase epsi... Potri.012G039300
[exp]
0 1
AT5G08020 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA... Potri.015G057300
[exp]
7.87 0.8853
AT2G16440 MCM4 MINICHROMOSOME MAINTENANCE 4, ... Potri.009G121500
[exp]
7.93 0.8868
AT2G20980 MCM10 minichromosome maintenance 10 ... Potri.009G134500
[exp]
12.48 0.8836
AT2G37960 unknown protein Potri.006G094600
[exp]
14.28 0.8825
AT3G42660 transducin family protein / WD... Potri.012G065200
[exp]
14.73 0.8811
AT1G07270 Cell division control, Cdc6 (.... Potri.001G250200
[exp]
16.24 0.8780
AT5G44635 MCM6 MINICHROMOSOME MAINTENANCE 6, ... Potri.001G074000
[exp]
17.02 0.8825
AT4G16970 Protein kinase superfamily pro... Potri.001G151900
[exp]
17.66 0.8820
AT5G43530 Helicase protein with RING/U-b... Potri.003G083400
[exp]
19.89 0.8514
AT3G59550 ATSYN3, SYN3, A... SISTER CHROMATID COHESION 1 PR... Potri.001G225600
[exp]
27.00 0.8723 SYN3.1

Potri.012G039300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.