Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73460 1344 / 0 Protein kinase superfamily protein (.1) AT1G73450 1323 / 0 Protein kinase superfamily protein (.1) AT3G17750 1236 / 0 Protein kinase superfamily protein (.1) AT2G40120 523 / 1e-173 Protein kinase superfamily protein (.1) AT4G03175 178 / 1e-51 Protein kinase superfamily protein (.1) AT5G35980 193 / 8e-51 YAK1 yeast YAK1-related gene 1 (.1.2) AT4G24740 174 / 1e-46 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT1G13350 177 / 1e-45 Protein kinase superfamily protein (.1.2) AT4G32660 166 / 3e-44 AME3 Protein kinase superfamily protein (.1.2.3) AT3G53640 171 / 5e-44 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G033400 [exp] 1994 / 0 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1) Potri.008G069000 [exp] 551 / 0 AT2G40120 607 / 0.0 Protein kinase superfamily protein (.1) Potri.010G188400 [exp] 550 / 0 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.013G075300 [exp] 207 / 9e-55 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.019G043400 [exp] 195 / 6e-51 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.006G244400 [exp] 171 / 4e-46 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G126900 [exp] 179 / 1e-45 AT3G25840 727 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G119100 [exp] 177 / 6e-45 AT3G25840 689 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G085700 [exp] 167 / 2e-44 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042297 [exp] 1602 / 0 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1) Lus10031902 [exp] 1570 / 0 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1) Lus10031329 [exp] 895 / 0 AT1G73460 645 / 0.0 Protein kinase superfamily protein (.1) Lus10026360 [exp] 868 / 0 AT1G73460 680 / 0.0 Protein kinase superfamily protein (.1) Lus10028283 [exp] 535 / 5e-177 AT2G40120 587 / 0.0 Protein kinase superfamily protein (.1) Lus10040203 [exp] 526 / 1e-171 AT2G40120 590 / 0.0 Protein kinase superfamily protein (.1) Lus10031328 [exp] 410 / 8e-136 AT1G73450 405 / 6e-135 Protein kinase superfamily protein (.1) Lus10020366 [exp] 199 / 7e-52 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10009542 [exp] 197 / 2e-51 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10036878 [exp] 169 / 4e-45 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.012G039700.1 pacid=42782947 polypeptide=Potri.012G039700.1.p locus=Potri.012G039700 ID=Potri.012G039700.1.v4.1 annot-version=v4.1 ATGGCGGAGACAAGCTCTGTTGATGTGATTCTTGACTTTCTGAGGAGAAATCGCTTCACAAGAGCGGAGGCAGCATTGCGCAGTGAGCTTAGTAAACGCC CTGATTTGAAAGGATTCCTTCAAAAACTTACCCTTGAAGATAATGATTTGGGGAAAGTGGTGGAAGAAGAGAATGGGGGAAAATTGGCGAGTCATACTCC AGGTTCAGGTTCTCAAAATAGTGGTGAAATTTCTAAGGAACTTATTGTGAAAGAAATAGAGTGTGGGGTGGATAGAAATGGGCCTGAAAGCAAATGGAGA AATTCTGCTTCTGTTGGGGAACGGGGTAGTAAAAATAATGAACCAATTGATTCAGATGATACTTTGCTTGATTTGTATTCATGGAACTTTAATCCAAGCA ATGGTCCTTCAAATCCTTACAAGAATGATGTTGGTACTAGCACCAGTAACTTCTCTGCTAGAGCAAATGCCAAATCAGGAGAGGAGATTATCTTTCCTGG TGAAAATAAAAGTCCATGGCTTGGAAACAATAGTACTATTAATGTCAATGTGGAATCCAAGTATAACAAAATTCAAGCTAATGAATTGAAGGAACTTGAT CGGGAACTTAGACCTACTGTTGCATTCTCTGCAGATAACCCATGGTCTAAAAATGAGGAGCCCACAAGTTCTTCCTCGGACCTGTGGAAAGATTATTCTG TCAAGACTGTTTTTCCGTTCCCCAAGGGCGATGTATTGACCAGCTATGGTATCACTTCAAGTTCAGACAAAAGAGATGGAAAGAAGAAAGCAGATACAAG TGATGTTAGAGCAGCTATTAAAGAACAGGTGGATGAGGTTGGAAGAACTTTGTTCATTGGAAAGTCTCAAGGGAGCACAGAGCAGAATAATTTAAGTGGC TTAGGGTTTTCTCTTGCATCTGATATTCCAAAGGAAGAATATCCTAGGCTTCCGCCAGTTAAACTCAAGTCGGAGGATAAGCCATTGATCAATTGGCAGG AAAAGTTTGAGCGTGATGGGCCAAGTTCAAAGGTCATCAGTGCTGATAATAGCTACCTTATAGGTTCCTATCTTGACGTTCCTGTCGGACAAGAAATCAA TTCTTCAGGTGGAAAAAGGATTGCAGGAGGCAGTTGGCTATCTGTAAGTCAGGGGATTGCTGAGGATACATCTGATCTGGTTTCTGGTTTTGCTACTGTT GGTGATGGATTAAGCGAATCCATTGATTATCCAAATGAGTATTGGGATTCCGATGAATATGATGATGACGATGATGTTGGATACATGAGACAACCTATCG AGGATGAGGCCTGGTTTCTGGCTCATGAAGTTGATTACCCAAGTGACAATGAAAAGGGTACTGGGCATGGGAGTGTTCCAGACCCACAGGATAGAGTTCC AACCAAAGATGAAGATGATGATCAATCTTTTGCTGAGGAGGATTCTTACTTTTCTGGTGAGCAGTTATTTCAAGAAAAAAATGTCGAACCAGTGACAGCA TCAGATGATCCTATAGGATTGTCGGTGGCAGAAATGTATGGGAGAACTAATGAGAGTGATTTAATAGCTCAATATGATGGGCAGTTGATGGATGAAGAAG AACTAAATTTGATGCGAGCAGAACCTGTCTGGCAGGGGTTTGTCACGCAAACGAATGAACTCATCATGATAGGAGATGGGAAGGTCCTGGATGAGTGTGG AAGGCCACGTTTAGATGATATTTGTATGGATGACGATCAACATGGTTCAGTTAGATCGATTGGTGTGGGTATCAACAGCGATGCTGCTGATATTGGAAGT GAAATACGGGAAAGTTTGGTTGGAGGCAGCAGTGAAGGGGATCTAGAGTACTTTCATGATCATGATGTTGGAGTTGGTGGATCTAGATCTTCTCACCATG ACTCAGAAAAAAAATATGTTGATAAACAAAACAGGGACAAGAAGAAACTCGATAAATATGATTCCAGTAAATATGTGGTTGGGAGTGACAGAGATGTGCG TGCTCAAGGTAAAAATCATACAGATGGCGGGTTTTCATTCCCCCCACCACTGAGGGGTGAACAGTTGCCGCAGAAAGGCTCTAGCAAATCTTTATGGTCA AACAACTGCAATGTTGCTGCCAGTGAAGAAACTAATGATCACTTGAATGCTTTGATGGGGCCTGATGACATGCATGGTACATGGCAGCGGAAAAGCAGTG ATTCCTCAACTGTTAAAAGTTCCAGGGATGAAAATAATATGAATGCTGTTGGATCAGCAAATTCTAGTCCCTCTTCTCTCTCAAATTATGGTTATGCAGA ACCAGAGTGTGCCATGAAGGAACAAGATGAGAAGATTGGCAGTGTGAGGGAAGAAGATCCCGGGGCATCCTTTGAGGATGAAGAGGCTGCTGCTGTTCAA GAACAAGTAAGGCAAATCAAGGCTCAGGAGGAGGAATTTGAAACTTTCAACCTTAAGATTGTGCATAGGAAAAACAGAACTGGCTTTGAGGAGGACAAGA ACTTCCATGTTGTTTTGAATTCTGTAATTGCTGGCCGTTATCATGTTACTGAGTATCTTGGGTCAGCTGCTTTTAGTAAAGCTATACAAGCACATGATCT GCACACAGGCATTGATGTTTGTGTGAAAATTATAAAAAACAACAAGGACTTCTTTGATCAAAGTCTTGATGAGATAAAGCTTCTTAAGTATGTCAACAAG CATGATCCTGCTGACAAGTACCACATTCTCAGATTGTATGATTACTTCTACTACCGAGAGCATTTGTTAATCGTATGTGAGCTTCTGAAGGCAAACTTAT ATGAGTTTCATAAGTTCAATAGAGAATCAGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGTCAATTACCACTCAATGTTTGGAGGCACTTCAGTT TTTGCATGGCCTTGGTCTTATACACTGTGATTTGAAGCCTGAGAATATATTGGTGAAAAGCTATAGTAGATGTGAGGTGAAAGTCATTGATCTTGGGAGT AGCTGTTTTGAGACAGATCATCTGTGCTCCTATGTTCAATCCAGGTCGTATCGTGCACCAGAAGTTATCCTAGGACTTCCGTATGATAAGAAGATAGATG TTTGGTCACTTGGCTGCATTTTGGCAGAGCTTTGCACTGGCAATGTCCTATTCCAAAATGATTCACCAGCAACGTTACTTGCACGAGTTATTGGAATTAT AGGTCCCATTGATCAAAACATGCTAGCAAAGGGACGAGATACATACAAGTATTTTACCAAGAATCACATGCTTTATGAGCGAAATCAGGATACTAGCAGG CTGGAGTACCTGATACCTAAGAAGACATCCCTGAGGCACCGTTTGCCAATGGGGGACCAGGGCTTCATTGACTTTGTTTCTCATTTGCTTGAAGTAAACC CAAAGAAACGCCCTTCTGCATCTGAGGCTCTGAAGCACCCATGGCTATCATACCCTTATGAGCCCATATCAGCTTGA
AA sequence Show only first row Show all	>Potri.012G039700.1 pacid=42782947 polypeptide=Potri.012G039700.1.p locus=Potri.012G039700 ID=Potri.012G039700.1.v4.1 annot-version=v4.1 MAETSSVDVILDFLRRNRFTRAEAALRSELSKRPDLKGFLQKLTLEDNDLGKVVEEENGGKLASHTPGSGSQNSGEISKELIVKEIECGVDRNGPESKWR NSASVGERGSKNNEPIDSDDTLLDLYSWNFNPSNGPSNPYKNDVGTSTSNFSARANAKSGEEIIFPGENKSPWLGNNSTINVNVESKYNKIQANELKELD RELRPTVAFSADNPWSKNEEPTSSSSDLWKDYSVKTVFPFPKGDVLTSYGITSSSDKRDGKKKADTSDVRAAIKEQVDEVGRTLFIGKSQGSTEQNNLSG LGFSLASDIPKEEYPRLPPVKLKSEDKPLINWQEKFERDGPSSKVISADNSYLIGSYLDVPVGQEINSSGGKRIAGGSWLSVSQGIAEDTSDLVSGFATV GDGLSESIDYPNEYWDSDEYDDDDDVGYMRQPIEDEAWFLAHEVDYPSDNEKGTGHGSVPDPQDRVPTKDEDDDQSFAEEDSYFSGEQLFQEKNVEPVTA SDDPIGLSVAEMYGRTNESDLIAQYDGQLMDEEELNLMRAEPVWQGFVTQTNELIMIGDGKVLDECGRPRLDDICMDDDQHGSVRSIGVGINSDAADIGS EIRESLVGGSSEGDLEYFHDHDVGVGGSRSSHHDSEKKYVDKQNRDKKKLDKYDSSKYVVGSDRDVRAQGKNHTDGGFSFPPPLRGEQLPQKGSSKSLWS NNCNVAASEETNDHLNALMGPDDMHGTWQRKSSDSSTVKSSRDENNMNAVGSANSSPSSLSNYGYAEPECAMKEQDEKIGSVREEDPGASFEDEEAAAVQ EQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGIDVCVKIIKNNKDFFDQSLDEIKLLKYVNK HDPADKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITTQCLEALQFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGS SCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDVWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIDQNMLAKGRDTYKYFTKNHMLYERNQDTSR LEYLIPKKTSLRHRLPMGDQGFIDFVSHLLEVNPKKRPSASEALKHPWLSYPYEPISA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73460			Protein kinase superfamily pro...		Potri.012G039700 [exp]	0	1
AT4G31430			unknown protein		Potri.006G275200 [exp]	2.00	0.8496
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Potri.001G193900 [exp]	2.82	0.8258
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.001G075900 [exp]	7.61	0.8441
					Potri.003G014056 [exp]	8.30	0.8277
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.016G012900 [exp]	16.12	0.7921
AT3G08020			PHD finger family protein (.1)		Potri.001G264800 [exp]	17.23	0.8131
AT2G28390			SAND family protein (.1)		Potri.004G211200 [exp]	19.62	0.7513
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Potri.013G012100 [exp]	21.33	0.7398
AT3G08020			PHD finger family protein (.1)		Potri.009G059500 [exp]	21.35	0.8192
AT1G18950			DDT domain superfamily (.1)		Potri.012G072200 [exp]	22.29	0.8194

Compare expression of checked genes

Potri.012G039700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.