Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39518 79 / 2e-18 Uncharacterised protein family (UPF0497) (.1) AT2G39530 78 / 4e-18 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G204700 [exp] 58 / 8e-11 AT2G39530 112 / 2e-31 Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031303 [exp] 147 / 7e-45 AT2G39530 87 / 2e-21 Uncharacterised protein family (UPF0497) (.1) Lus10031305 [exp] 105 / 2e-28 AT2G39530 89 / 3e-22 Uncharacterised protein family (UPF0497) (.1) Lus10031304 [exp] 103 / 7e-28 AT2G39518 89 / 3e-22 Uncharacterised protein family (UPF0497) (.1) Lus10031874 [exp] 99 / 7e-26 AT2G39530 92 / 1e-23 Uncharacterised protein family (UPF0497) (.1) Lus10023416 [exp] 75 / 7e-17 AT2G39530 132 / 4e-39 Uncharacterised protein family (UPF0497) (.1) Lus10031875 [exp] 74 / 2e-16 AT2G39530 86 / 4e-21 Uncharacterised protein family (UPF0497) (.1) Lus10040298 [exp] 62 / 6e-12 AT2G39518 106 / 2e-29 Uncharacterised protein family (UPF0497) (.1) Lus10031873 [exp] 42 / 4e-05 ND 47 / 4e-07
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.012G040100.1 pacid=42783495 polypeptide=Potri.012G040100.1.p locus=Potri.012G040100 ID=Potri.012G040100.1.v4.1 annot-version=v4.1 ATGGGGTCTAGAGCTATAGCAATCTCAACCCTTGTGCTGAGGATCTTCACTCTCCTAGCTTTAGTTGCTTGTGTGGTGCTTTTTATTACCAATACTTTTC GTTATGCAATGTTTGATGCAGGCTCCAAGGTCACTTTCAAGGATCTCACCACATACAGGTTCGTACTCTCGACGGCGGTAATTGGGGCAGCCTATACACT CTTGCAATTACCCTTTGCTTTGTACTATGCTTTGACAGAGAAGAGGTTGATAAAGGTCGATATCTTGCCGGAGCTTGACTTATATGGTGACAAGATCATC GCATTCCTTCTTGCCTCGGGTGTTGGTGCTGGTTTCGCAGTTAGTGTTGAGATCAAATCCCTTTTGAAAGACTTGTTTGATGCTTTTGCACTTGCTGGTT TTCAAGATACAGAAGACAGCAAGGCTCTCTATGATAATTTCATAAACAAGGGGATTATAGCTACCAGTGCTCTTGCCTTTGGATTTGTTTGCATGGCTTT AGTTTCAGTGCTTTCATCTGTCAACCGGACCAAGACTACTAAAGGTTTCTTCGGTTAA
AA sequence Show only first row Show all	>Potri.012G040100.1 pacid=42783495 polypeptide=Potri.012G040100.1.p locus=Potri.012G040100 ID=Potri.012G040100.1.v4.1 annot-version=v4.1 MGSRAIAISTLVLRIFTLLALVACVVLFITNTFRYAMFDAGSKVTFKDLTTYRFVLSTAVIGAAYTLLQLPFALYYALTEKRLIKVDILPELDLYGDKII AFLLASGVGAGFAVSVEIKSLLKDLFDAFALAGFQDTEDSKALYDNFINKGIIATSALAFGFVCMALVSVLSSVNRTKTTKGFFG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39518			Uncharacterised protein family...		Potri.012G040100 [exp]	0	1
					Potri.005G059400 [exp]	1.41	0.9990
AT3G54040			PAR1 protein (.1)		Potri.009G039900 [exp]	1.73	0.9990
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139200 [exp]	2.00	0.9990
					Potri.002G158700 [exp]	3.46	0.9989
					Potri.019G100100 [exp]	5.29	0.9984
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.012G115000 [exp]	5.47	0.9989	CYP728F1
					Potri.014G081800 [exp]	7.93	0.9977
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.001G113700 [exp]	8.12	0.9975
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.006G074101 [exp]	8.71	0.9966
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Potri.017G078600 [exp]	9.16	0.9972

Compare expression of checked genes

Potri.012G040100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.