Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68130 397 / 7e-136 C2H2ZnF IDD14beta, IDD14alpha, ATIDD14 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) AT1G25250 365 / 5e-124 C2H2ZnF ATIDD16 indeterminate(ID)-domain 16 (.1) AT2G01940 331 / 1e-109 C2H2ZnF SGR5, ATIDD15 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) AT5G66730 234 / 2e-71 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT3G50700 231 / 1e-70 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT1G55110 229 / 4e-70 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT1G03840 230 / 6e-70 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT2G02080 229 / 2e-69 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT1G14580 225 / 2e-68 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT5G03150 226 / 3e-68 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G033100 [exp] 763 / 0 AT2G01940 431 / 1e-148 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Potri.008G140400 [exp] 526 / 0 AT1G68130 437 / 5e-152 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) Potri.010G101200 [exp] 518 / 0 AT1G68130 428 / 1e-148 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) Potri.006G129300 [exp] 241 / 4e-74 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.013G019200 [exp] 241 / 8e-74 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.005G027200 [exp] 240 / 2e-73 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.002G208444 [exp] 240 / 5e-73 AT3G50700 311 / 2e-100 indeterminate(ID)-domain 2 (.1) Potri.016G088500 [exp] 238 / 1e-72 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.014G180600 [exp] 236 / 5e-72 AT3G50700 368 / 3e-123 indeterminate(ID)-domain 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031314 [exp] 439 / 2e-151 AT1G25250 426 / 2e-146 indeterminate(ID)-domain 16 (.1) Lus10031882 [exp] 333 / 1e-112 AT2G01940 324 / 1e-109 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Lus10026369 [exp] 328 / 7e-109 AT2G01940 399 / 5e-137 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Lus10010820 [exp] 233 / 1e-73 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 236 / 5e-72 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10019927 [exp] 233 / 6e-71 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10026497 [exp] 229 / 9e-70 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10008396 [exp] 231 / 1e-69 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10004497 [exp] 229 / 1e-69 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10041723 [exp] 228 / 5e-69 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G040200.1 pacid=42783467 polypeptide=Potri.012G040200.1.p locus=Potri.012G040200 ID=Potri.012G040200.1.v4.1 annot-version=v4.1 ATGTTAGCCAACAACTCTCTCTCTTCATCACTTCCTTGTAATTCTGAGCCATTTTCTTGCTTGGAAAATGGAAATAACATTAACAAGAGGAAAAGAAGGC CAGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCTTTATCACCAAAAACACTATTGGAATCCGATCGTTACGTTTGTGAGATCTGCAACCAAGGGTT TCAGAGAGACCAAAACCTACAGATGCATAGAAGAAGGCATAAAGTCCCATGGAAGCTACTAAAGAGAGAGACCCCAGTTGTAAGAAAACGTGTATTTGTA TGTCCAGAGCCTAGTTGCTTGCACCATGACCCTTGTCACGCGCTTGGTGATCTTGTCGGGATAAAGAAGCATTTTCGAAGAAAACATAGCAATCACAAAC AATGGGTTTGTGAAAAATGCTCTAAAGGTTATGCCGTTCAATCTGATTACAAAGCTCATCTCAAAACCTGTGGCACCCGTGGACATTCTTGTGATTGCGG CCGTGTTTTTTCCAGAGTTGAGAGTTTTATTGAGCACCAAGATGCTTGCAACATGGGGAATCTCCGATCAGAATCACAGTCACTACAACCAGCTGCATGC TTGTCTAGAACTGCTTCAAGTCCAAGCCCTTCTAGTGATACCAATTTTAGTACAGCTCCTTGGCTTCCTTTGATAATACCAAGAACAACACCTGATCATG CCATGTTCTTTATCACCCCTACTACTACTAGTAGTGTTGTGGATAAATCAGATTCTTCAAAAAGTGCTGCACACTACCATAATTTGGAGCTTCAGCTTTC GACTGCTTCAGGAAATCCCCTTGAGATCTCAGTTTCTCCTAAAAGAGAGGATAATCATTCCACTCAATTGCAGCTCTCAATTGGGTCGAGTGATGTTAGT GACAGAAATGAATCGAACATCAGTTACACAGACAAAGATCATGGCAAAAGCTCTCCAAGAGAGAACAATAATGGCAGTCCGAGACCTGAATTGGGTGCTT CAAGGCTTAAAGAGCAAGTGATCAGGGAGCAGTTAATGATGGCCATGGCAGAGAAGATTCATGCTGAAGAAGCAAGACAACAAGCAAAGAGACAAATTGA ATTGGCAGAACAAGAATTTGCCAATGCCAAGAGAATCAGGCAACAAGCTCAAGCTGAGTTAGACAAGGCGCAAGCTTTGAAACAGCATGCAATAAAGCAA ATCAATTCCACTATTCTACAAATTACTTGCCATGCTTGCAAACAGAAGTTCCATGCAAGAACACAAGCAGATGAGAACTCTTTGGTAATGAGTTACATGT CATCAGCTACAACAGAAGATGAAGTAGAGCACATTAATGGAATTGGTATAGCAAAAACATTTAACAGATGA
AA sequence Show only first row Show all	>Potri.012G040200.1 pacid=42783467 polypeptide=Potri.012G040200.1.p locus=Potri.012G040200 ID=Potri.012G040200.1.v4.1 annot-version=v4.1 MLANNSLSSSLPCNSEPFSCLENGNNINKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFV CPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGNLRSESQSLQPAAC LSRTASSPSPSSDTNFSTAPWLPLIIPRTTPDHAMFFITPTTTSSVVDKSDSSKSAAHYHNLELQLSTASGNPLEISVSPKREDNHSTQLQLSIGSSDVS DRNESNISYTDKDHGKSSPRENNNGSPRPELGASRLKEQVIREQLMMAMAEKIHAEEARQQAKRQIELAEQEFANAKRIRQQAQAELDKAQALKQHAIKQ INSTILQITCHACKQKFHARTQADENSLVMSYMSSATTEDEVEHINGIGIAKTFNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Potri.012G040200 [exp]	0	1
AT1G16260			Wall-associated kinase family ...		Potri.018G148432 [exp]	9.48	0.7262
AT1G18070			Translation elongation factor ...		Potri.013G093400 [exp]	21.21	0.7093
AT5G54130			Calcium-binding endonuclease/e...		Potri.015G004200 [exp]	38.78	0.7197
AT5G08260		SCPL35	serine carboxypeptidase-like 3...		Potri.007G072300 [exp]	45.74	0.6878
AT1G17410			Nucleoside diphosphate kinase ...		Potri.003G068100 [exp]	64.24	0.6739
AT2G05710		ACO3	aconitase 3 (.1)		Potri.014G153400 [exp]	64.93	0.6644
AT3G03620			MATE efflux family protein (.1...		Potri.015G139400 [exp]	74.83	0.7117
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Potri.009G044300 [exp]	75.68	0.7076
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.007G065600 [exp]	95.12	0.6887	Pt-LOS1.2
					Potri.018G072801 [exp]	103.94	0.7061

Compare expression of checked genes

Potri.012G040200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.