Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01930 259 / 3e-86 BBR_BPC BPC1, BBR/BPC1, ATBPC1 basic pentacysteine1 (.1.2) AT1G14685 256 / 4e-85 BBR_BPC BBR/BPC2, ATBPC2, BPC2 basic pentacysteine 2 (.1.2.3) AT1G68120 239 / 2e-78 BBR_BPC BPC3, BBR/BPC3, ATBPC3 basic pentacysteine 3 (.1) AT2G35550 168 / 3e-51 BBR_BPC BPC7, BBR/BPC7, ATBPC7 basic pentacysteine 7 (.1.2.3.4) AT2G21240 144 / 4e-41 BBR_BPC BPC4, BBR/BPC4, ATBPC4 basic pentacysteine 4 (.1.2) AT5G42520 143 / 7e-41 BBR_BPC BPC6, BBR/BPC6, ATBPC6 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) AT4G38910 135 / 5e-38 BBR_BPC BPC5, BBR/BPC5, ATBPC5 basic pentacysteine 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G032900 [exp] 492 / 5e-178 AT1G14685 259 / 3e-86 basic pentacysteine 2 (.1.2.3) Potri.015G032800 [exp] 481 / 2e-173 AT1G14685 268 / 9e-90 basic pentacysteine 2 (.1.2.3) Potri.012G040700 [exp] 450 / 2e-161 AT1G14685 247 / 1e-81 basic pentacysteine 2 (.1.2.3) Potri.012G040800 [exp] 375 / 1e-131 AT1G14685 190 / 3e-59 basic pentacysteine 2 (.1.2.3) Potri.010G101400 [exp] 300 / 4e-102 AT1G14685 300 / 1e-102 basic pentacysteine 2 (.1.2.3) Potri.015G033000 [exp] 293 / 7e-101 AT2G01930 123 / 1e-34 basic pentacysteine1 (.1.2) Potri.008G140200 [exp] 288 / 8e-98 AT2G01930 296 / 1e-100 basic pentacysteine1 (.1.2) Potri.009G125300 [exp] 155 / 3e-45 AT2G21240 377 / 5e-132 basic pentacysteine 4 (.1.2) Potri.001G133900 [exp] 152 / 3e-45 AT2G35550 199 / 3e-64 basic pentacysteine 7 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023543 [exp] 301 / 2e-102 AT2G01930 292 / 5e-99 basic pentacysteine1 (.1.2) Lus10040427 [exp] 294 / 2e-99 AT2G01930 295 / 4e-100 basic pentacysteine1 (.1.2) Lus10024313 [exp] 151 / 2e-43 AT5G42520 436 / 5e-154 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Lus10012389 [exp] 149 / 1e-42 AT5G42520 432 / 1e-152 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Lus10031078 [exp] 146 / 5e-42 AT2G21240 323 / 5e-111 basic pentacysteine 4 (.1.2) Lus10035462 [exp] 147 / 5e-41 AT2G21240 325 / 2e-109 basic pentacysteine 4 (.1.2) Lus10018060 [exp] 142 / 3e-40 AT2G21240 355 / 1e-123 basic pentacysteine 4 (.1.2) Lus10042056 [exp] 141 / 5e-40 AT2G21240 350 / 1e-121 basic pentacysteine 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06217 [poplar] [flax] GAGA_bind GAGA binding protein-like family
Representative CDS sequence Show only first row Show all	>Potri.012G040600.1 pacid=42782552 polypeptide=Potri.012G040600.1.p locus=Potri.012G040600 ID=Potri.012G040600.1.v4.1 annot-version=v4.1 ATGGTAAAGTTTGAAATAATGGATGAAGATAACAGTTTGAATATTCGTAATTGGGGTTACTATGAACCAACATCTGTTAAAGGAAATCTGGGGCTTCAGC TCTTGTCCCCAACAATGGCTGAGAAACCCTTCCTGGGTGCACGCAGTAATGCGATCATGACAAATGTGAACGGAGGTTTTCACCATAGGGATATTGGGGT TTCGCAGCCCATGTTCCCTATGGAGTACATGAGGGATGTTTGGATAGGTCATAGAGAGAAGCTTCTCAGTATGTTGCCTGAAAACCATAATTATGAGGCA CTTTTGCCTGAAACAGCTTCAACTCATCATGTGCAAGTGTTTCAACCACCTGATTCGGAAAATGATGAAATGTTGGACCAAGTTGAAGAGTCTGGTTTTG TAGAAAAGGAAAATGGTCCCAATAAAAAGAGGCAGCGTGCTAATGCCCCAAAATCCCCTAAAGCAAAGAAGGGTACGAGGGCTCCCAGAGTACCCAAGCC TGAGGGTAGTCCTTCTGTTCAGCGAGTAAGAACTGCCAAGAAAACCGCTGAAATTATGATAAATGGGATCAATATGGACATGTCAGTTATTCCTATACCG GTTTGCTCATGTACTGGCAACCCCCAACAAAGCTATCGTTGGGGTTGTGGTGGGTGGCAATCAGCTTGTTGTACGACATGCATATCTATGTATCCGTTGC CTATGAGTACGAAAAGGCGTGGTGCAAGGATAGCAGGTAGAAAAATGAGTTCAGGAGCTTTTAAGAAGGTCTTAGAGAAACTTGCTGATGAAGGCTATGA CTTCTCTAATCCGATTGATCTGAGAACTCATTGGGCTAAACATGGTACGAACAAGTTTGTCACTATCAGGTAG
AA sequence Show only first row Show all	>Potri.012G040600.1 pacid=42782552 polypeptide=Potri.012G040600.1.p locus=Potri.012G040600 ID=Potri.012G040600.1.v4.1 annot-version=v4.1 MVKFEIMDEDNSLNIRNWGYYEPTSVKGNLGLQLLSPTMAEKPFLGARSNAIMTNVNGGFHHRDIGVSQPMFPMEYMRDVWIGHREKLLSMLPENHNYEA LLPETASTHHVQVFQPPDSENDEMLDQVEESGFVEKENGPNKKRQRANAPKSPKAKKGTRAPRVPKPEGSPSVQRVRTAKKTAEIMINGINMDMSVIPIP VCSCTGNPQQSYRWGCGGWQSACCTTCISMYPLPMSTKRRGARIAGRKMSSGAFKKVLEKLADEGYDFSNPIDLRTHWAKHGTNKFVTIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Potri.012G040600 [exp]	0	1
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Potri.004G183300 [exp]	4.58	0.6315
AT3G53850			Uncharacterised protein family...		Potri.006G090400 [exp]	9.27	0.6615
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Potri.002G177600 [exp]	17.14	0.5911	Pt-GIF2.1
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Potri.001G153900 [exp]	30.04	0.5297
AT5G36930			Disease resistance protein (TI...		Potri.005G004500 [exp]	32.44	0.5441
AT4G10270			Wound-responsive family protei...		Potri.019G117201 [exp]	36.87	0.5609
AT3G18060			transducin family protein / WD...		Potri.012G049200 [exp]	37.41	0.5472
AT2G33630			NAD(P)-binding Rossmann-fold s...		Potri.002G005100 [exp]	46.34	0.5733
AT1G06060			LisH and RanBPM domains contai...		Potri.002G029700 [exp]	50.55	0.5056
AT4G31410			Protein of unknown function (D...		Potri.006G275400 [exp]	54.90	0.5281

Compare expression of checked genes

Potri.012G040600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.