Plant FIBer expression Database

Potri.012G041100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48430 897 / 0 Dihydroxyacetone kinase (.1)
AT3G17770 896 / 0 Dihydroxyacetone kinase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G032500
[exp]
1068 / 0 AT1G48430 887 / 0.0 Dihydroxyacetone kinase (.1)
Potri.011G011650
[exp]
101 / 3e-26 AT3G17770 98 / 6e-26 Dihydroxyacetone kinase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031311
[exp]
942 / 0 AT3G17770 899 / 0.0 Dihydroxyacetone kinase (.1)
Lus10031879
[exp]
867 / 0 AT3G17770 826 / 0.0 Dihydroxyacetone kinase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0245 EDD PF02733 Dak1 Dak1 domain
CL0245 PF02734 Dak2 DAK2 domain
Representative CDS sequence
>Potri.012G041100.1 pacid=42783972 polypeptide=Potri.012G041100.1.p locus=Potri.012G041100 ID=Potri.012G041100.1.v4.1 annot-version=v4.1
ATGGCTTCTCAAGGAAAGAAACTCATTAACGACCCTAACGATGTTGTAACTGAGTTCATTGAAGGTCTTGTGGAAACCTACCCTGGATTACAGTACCTGG
ATGGCTTTCCGGAGGTTAAGGTTGTGTTACGTGCTGATCATGCGAGTGCTATGCTTGACAAAGTTGCGATTATATCAGGAGGAGGAAGTGGGCACGAACC
TGCCCATGCTGGATTTGTCGGAGAAGGGATGCTAAGTGCTGCTATCTGTGGAGAAGTTTTTACTTCCCCCCAAGTTGATGCAATTCTAGCTGGTATCCGA
GCTGTAACTGGTCCGATGGGATGTCTTCTGATTGTCAAGAATTATACTGGCGATCGTCTAAATTTTGGTTTGGCTGCTGAGCAAGCAAAATCTGAAGGTT
ATAAAGTAGAGACTGTAATTGTTGGAGATGACTGTGCTTTACCTCCACCTCGAGGCATAGCTGGACGAAGAGGGTTGGCGGGGACTATTCTTGTTCATAA
GGTTGCTGGAGCTGCAGCTGCTGCTGGCCTTTCTCTTGATGAAGTTGCTGCAGAAGCGAAACGTGCATCTGAAATGGTTGGAACAATGGGTGTTGCATTG
TCAGTCGGTACACTGCCTGGTCAGGTTACATCAGATCGTTTGGGCCCAGGAAAGATGGAACTAGGTCTTGGAATTCATGGTGAACCTGGTGCTGCTTTAG
CGGACCTTCAGCCTGTCGAAGTGGTGGTTTCTCATGTTCTTCAACAAATTCTATCACCGGAGACTAACTATGTCCCAATTACTCGCGGCAATAGAGTGGT
ACTCTTGGTCAATGGACTAGGCGCCACCCCTGGTATGGAGTTAATGATTGCAGCAGGAAAAGCAGTTCCTCAGTTGCAGCTTGAACATGGATTGGCTGTC
GATAGAGTGTATACTGGATCTTTTATGACTTCCCTTGATATGGCAGGATTCTCAATTTCCATAATGAAGGCAGATGAACCATTTTTGCAACGATTGGATG
CTGCTACCAAGGCTCCATACTGGCCTGTTGGAGTAGATGGTAATCGCCCACCTGCCAAGATACCTGTTCCACTGCCACTGTCTCATTCAGCAAAGAGTGA
TGAGTCTTTAAGTCGGCCGCAACAGCTTAGTGAACAAGGGCATCTTCTTGAGGTGGCTATTGAAGCAGCAGTGAATGCGATCATTGATCTTAGGGACAAT
TTAAATGAATGGGATGGCAGAGTAGGTGATGGTGACTGTGGATCAACAATGTATAGGGGTGCAACAGCAATTCTAGAGGACATGAAGAAGCATTATCCCT
TGAATGATGCTGCAGAAACAGTGAACGAAATTGGATCATCTATCAGAAGAGTTATGGGAGGAACCAGTGGAATTATATATACCATATTCTGCAAGGCAGC
TTGTGTGCAGTTGAAAGCAAACACCCAGTCAGTTGTCGCATCGAAACAATGGGCTGAAGCACTTGAAGCTTCCATAGCTGCAGTCAGTAAATATGGTGGC
GCTAGTGCTGGATTTCGCACATTGTTAGATGCCCTTATTCCAGCTTCAGCTGTTCTTCAGGAGAGGCTAAATGCCGGGGATGATCCTTGCACTGCTTTTC
TTCTCTCATCTGAAGCAGCAGTGGCTGGAGCCGAATCAACCAAACACATGCAAGCACAGGCTGGTCGCTCAACATACATCTCCTCAGACATTCTTGCCAC
CGTGCCTGACCCTGGGGCCATGGCTGCAGCTGCATGGTATAGAGCAGCTGCCATAGCTATCAAAAACAACTACCAGCTTCATGAGTAG
AA sequence
>Potri.012G041100.1 pacid=42783972 polypeptide=Potri.012G041100.1.p locus=Potri.012G041100 ID=Potri.012G041100.1.v4.1 annot-version=v4.1
MASQGKKLINDPNDVVTEFIEGLVETYPGLQYLDGFPEVKVVLRADHASAMLDKVAIISGGGSGHEPAHAGFVGEGMLSAAICGEVFTSPQVDAILAGIR
AVTGPMGCLLIVKNYTGDRLNFGLAAEQAKSEGYKVETVIVGDDCALPPPRGIAGRRGLAGTILVHKVAGAAAAAGLSLDEVAAEAKRASEMVGTMGVAL
SVGTLPGQVTSDRLGPGKMELGLGIHGEPGAALADLQPVEVVVSHVLQQILSPETNYVPITRGNRVVLLVNGLGATPGMELMIAAGKAVPQLQLEHGLAV
DRVYTGSFMTSLDMAGFSISIMKADEPFLQRLDAATKAPYWPVGVDGNRPPAKIPVPLPLSHSAKSDESLSRPQQLSEQGHLLEVAIEAAVNAIIDLRDN
LNEWDGRVGDGDCGSTMYRGATAILEDMKKHYPLNDAAETVNEIGSSIRRVMGGTSGIIYTIFCKAACVQLKANTQSVVASKQWAEALEASIAAVSKYGG
ASAGFRTLLDALIPASAVLQERLNAGDDPCTAFLLSSEAAVAGAESTKHMQAQAGRSTYISSDILATVPDPGAMAAAAWYRAAAIAIKNNYQLHE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G48430 Dihydroxyacetone kinase (.1) Potri.012G041100
[exp]
0 1
Potri.001G241254
[exp]
3.00 0.7059
Potri.002G208637
[exp]
4.12 0.6925
AT3G27320 alpha/beta-Hydrolases superfam... Potri.010G053700
[exp]
6.40 0.7527
AT5G18820 Cpn60alpha2, EM... embryo defective 3007, chapero... Potri.015G122800
[exp]
7.93 0.7462
AT2G04740 ankyrin repeat family protein ... Potri.014G163200
[exp]
8.83 0.6582
AT4G21150 HAP6 HAPLESS 6, ribophorin II (RPN2... Potri.005G226100
[exp]
12.00 0.7146
AT1G67490 KNOPF, KNF, GCS... KNOPF, glucosidase 1 (.1.2) Potri.010G059000
[exp]
19.74 0.6746 Pt-GCS1.3
AT2G30110 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-... Potri.001G280600
[exp]
32.61 0.6239 Pt-ATUBA1.5
AT1G80670 RAE1 RNA export factor 1, Transduci... Potri.003G180000
[exp]
36.27 0.7100
AT1G24520 BCP1 homolog of Brassica campestris... Potri.008G182400
[exp]
54.02 0.6827

Potri.012G041100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.