Plant FIBer expression Database

Potri.012G041300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G18310 595 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025089
[exp]
825 / 0 AT3G18310 516 / 1e-169 unknown protein
Lus10023992
[exp]
803 / 0 AT3G18310 518 / 4e-163 unknown protein
Lus10027301
[exp]
176 / 1e-49 AT3G18310 100 / 3e-24 unknown protein
PFAM info
Representative CDS sequence
>Potri.012G041300.1 pacid=42784012 polypeptide=Potri.012G041300.1.p locus=Potri.012G041300 ID=Potri.012G041300.1.v4.1 annot-version=v4.1
ATGGCAATGATCGAGTTTTCACAAGAATGGAAGTCAGGATTTCCAATAGACACTGTGTCTAAAGCGCCACTCTTACTCTCAAAACAAACCTCAGAATCCC
TTATTGGTCCACTTGTCTTCAACCCAATCCCTGAATCATTGGCACACCTCTTTACCTCTCCTGCTCTCTCTCCTCCTCTTCTAAACCCACCACCCCATCT
TTCTCTCACAAGATTTATCTCCACTTCAACACTCGCTGACTCTCCTCTCCCTCTCTCTACTGCTTCCTCTATTGCCTTTTCTTTTGGCCCTCAAGATCTA
CACTTTTCTTCTCCTTTGTTAGCTTATAATAGACTCCAGTTCCTTAAATGCCCACATGATGATACTGTTGTTGTGTTTTTTTCCACTGGGACTAATCTTG
ACCGAGTTGGGTTTTTGTTACTTTCTGTTAAAGATAAGAGCTTGGTGGCTACTGGGGATCAAAAGGGTGGGATTTTTACTGCTAGTAAGAGTTTGGGGTC
AAAGATTGTGAGGGTCTTAGTGAACCCCATTGAGGATGATTCTTTTTTGAATGGTAATTATTCCTTTTCTGGCTCTTTTGGTTATTTGTTAGTTTATACT
ATGTATTCTGTGAATTGGTTCTGCGTTAAATATAGTGAAAGTATGAAAAGGCCTGTTTTGAGTTATTTAGGTTGTAAGAATTTTAAGAGTTGTGGAATTG
CGAGTGCTTGTTGGAGTCCTTATATAAAAGTTCAGAGTGTGGTTTTGTTGGAGAATGGTACATTATTTTTGTTTGATTTGGAAGCCGATTGTTCTGATAT
GTATTTTAGGGGTACTAAATTGAAAGTTTCGTGGGGTGATGAAGGTAAGTTAGGAGATGGTAAATGGTTAGGGTGTGAGTTTAGTTGGCATTGTAGGGTT
TTGATTGTTGCACGGTCAGATGCTGTTTTTATGATTGATTGGAAATGCGGTGGTTTTGATGTGACTTGTTTAGCAAGGATTGATATGTTTAGTGCATATG
CTCTTAGTGAAAAGGAACGGTTCCTAGCTATGTCCAGGGCAGTTTCGGATAGTCTTCATTTTGTTTTGGTTTCTGAAACTATGTTAGTTATTTGTGATGT
GCGCAAGCCTATGATACCATTGTTGCAATGGGCACATGGTCTTGATAAGCCATGTTTTATTGATGTGTTTAGATTGTCTGATTTGAGGTCCAACTCAAGG
GATGACACACATGACTGGGCGAATTCTTCAGGTTTTGGCATTATTTTGGGGTCATTTTGGAATTGTGAATTCAGCCTCTTTTGCTATGGACCATCCTTTC
CTCCTCGTAAAGGGTCCTTCGCCTTGGAAATTTCTAAATTTTCCAGTTGTTTATACGCTTGGGACCACCCTTCAGGTCTCATGTTATCAGGTGATGATTG
TCAACGTGGAGATTGCCTTGTAAGAGAACAGTTTTGGAAGGAAGCTCTTCCTGAATGGACTGATTGGCAGCAGAAAAAAGACATAGTGTTGGGCTTTGGT
GTTTTAAGCAACGATCTCTCTTCATTGTTGTTTGAGCCTGATGAATTTGGTGGTTTTGTTTTAATTAGATTGATGTCATCAGGAAAGCTTGAATCACAGA
GATATTGTGCCTCATGGGAATTGGTTAAAAATATAGAAGTGGCTCAAAGAGATCCAATGCTGCATTCAGAAGACAACTTACTTTACTTCATGGGTGATGA
GGAATACAAGGTCCCTAGAAAATTTAAGTATTTTGAACTGAACTATCTACATGCACATTTGAATGGCAACCTTTCTCAAGTTCTCGATTCAAACATGGCA
AAGCCTTGTGAGTGTCCTCATGAGAAGGAATTGTTCAGCCTAGAATTTCATGAAGTATTGTGCAAGAAGCTGAAAATTTGTGGGTTTGGTCAATTTAGAA
CATCCCCTGCCATTACAGTTACATTTAATGACATAAACTTGCCAACAAGCATCCATGAGGTAGCTTTGAGGAGAATGTGGGCTGAATTGCCAATGGAATT
CTTGCAACTCGCCTTTTCCAGCTATTCTGAATTGCATGAAGTACTTTTGGATCAGAAAAGGGTTGCTTTGGAATTTTCAGTTGTTCCAGAACTACCTCAA
TTACCACCATTTTTCTTGCGGAAGCCTTCAAACCACAGCAATAGGTGTTTACGTAAAGTGCAAAGTAGTGATGCCCTTGTGGGTCCAGCTCTTCCTCTCC
CTATTTTGTCTACACTTCATGAGCTTCGTAATGGTTGTCCAAATTCACAGGAAGAAACAGGCGGATTTTCATCAGAATCAGAACTTAGTGTTCGATGCAA
TGAAGTTATGCAGGTGGCCAAGGAAGTGGCTGTTTCAGATTCCACAACCAAGCTTCAGGATGATAATGCTATATCCCTTGATGATGACAGAGATGACTTT
TTGGATCATTCTGAAAAACCAAAGTCTTTCCTTCTATACCATCCAACTGCATGTCAGCTCTCTTTTCAAGTTCACAAAGAGGATAATTGTGTGTATCAGA
ATGACAAGTTTGCTTCCATGATTACAAAAGTGCATGAGAAACAGTCACCTCATCCTGAAAAGGTGGAAACTTTCAAACTAGAATTCTTTGATGATCTGTG
CCCAATCGACTTGAAATTTGATGCTCGTGAGGTGAAATTTAGTTCACAAGAGTCGAAAATTTCAAATTTATTGAAGAAGAATTTTTCAAAATGGCAAGAG
GAATTCACTCCTTATCGGGAATTTTGTTCCCGATTTACATCCCCTCGTGACAAGATGGCCTAA
AA sequence
>Potri.012G041300.1 pacid=42784012 polypeptide=Potri.012G041300.1.p locus=Potri.012G041300 ID=Potri.012G041300.1.v4.1 annot-version=v4.1
MAMIEFSQEWKSGFPIDTVSKAPLLLSKQTSESLIGPLVFNPIPESLAHLFTSPALSPPLLNPPPHLSLTRFISTSTLADSPLPLSTASSIAFSFGPQDL
HFSSPLLAYNRLQFLKCPHDDTVVVFFSTGTNLDRVGFLLLSVKDKSLVATGDQKGGIFTASKSLGSKIVRVLVNPIEDDSFLNGNYSFSGSFGYLLVYT
MYSVNWFCVKYSESMKRPVLSYLGCKNFKSCGIASACWSPYIKVQSVVLLENGTLFLFDLEADCSDMYFRGTKLKVSWGDEGKLGDGKWLGCEFSWHCRV
LIVARSDAVFMIDWKCGGFDVTCLARIDMFSAYALSEKERFLAMSRAVSDSLHFVLVSETMLVICDVRKPMIPLLQWAHGLDKPCFIDVFRLSDLRSNSR
DDTHDWANSSGFGIILGSFWNCEFSLFCYGPSFPPRKGSFALEISKFSSCLYAWDHPSGLMLSGDDCQRGDCLVREQFWKEALPEWTDWQQKKDIVLGFG
VLSNDLSSLLFEPDEFGGFVLIRLMSSGKLESQRYCASWELVKNIEVAQRDPMLHSEDNLLYFMGDEEYKVPRKFKYFELNYLHAHLNGNLSQVLDSNMA
KPCECPHEKELFSLEFHEVLCKKLKICGFGQFRTSPAITVTFNDINLPTSIHEVALRRMWAELPMEFLQLAFSSYSELHEVLLDQKRVALEFSVVPELPQ
LPPFFLRKPSNHSNRCLRKVQSSDALVGPALPLPILSTLHELRNGCPNSQEETGGFSSESELSVRCNEVMQVAKEVAVSDSTTKLQDDNAISLDDDRDDF
LDHSEKPKSFLLYHPTACQLSFQVHKEDNCVYQNDKFASMITKVHEKQSPHPEKVETFKLEFFDDLCPIDLKFDAREVKFSSQESKISNLLKKNFSKWQE
EFTPYREFCSRFTSPRDKMA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G18310 unknown protein Potri.012G041300
[exp]
0 1
AT1G55325 MAB2, GCT MACCHI-BOU 2, GRAND CENTRAL, R... Potri.003G220800
[exp]
3.00 0.8735
AT1G16540 ACI2, ABA3, SIR... SIRTINOL RESISTANT 3, LOW OSMO... Potri.007G066400
[exp]
7.87 0.8185 Pt-ABA3.1
AT1G63130 Tetratricopeptide repeat (TPR)... Potri.005G046000
[exp]
8.48 0.7814
AT5G64420 DNA polymerase V family (.1) Potri.009G079900
[exp]
10.58 0.7902
AT1G75660 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) Potri.002G024100
[exp]
11.22 0.8013 XRN2.1
AT5G08550 ILP1 increased level of polyploidy1... Potri.006G020400
[exp]
11.66 0.7654
AT5G08550 ILP1 increased level of polyploidy1... Potri.006G020200
[exp]
13.85 0.7108
AT5G56310 Pentatricopeptide repeat (PPR)... Potri.003G223900
[exp]
14.14 0.8019
AT3G62310 RNA helicase family protein (.... Potri.014G117900
[exp]
14.89 0.7347
AT5G15270 RNA-binding KH domain-containi... Potri.010G167100
[exp]
15.29 0.7636

Potri.012G041300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.