Plant FIBer expression Database

Potri.012G041400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G18335 252 / 5e-84 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000353
[exp]
323 / 8e-106 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3)
Lus10000615
[exp]
41 / 0.0008 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0257 Acetyltrans PF00583 Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence
>Potri.012G041400.6 pacid=42783130 polypeptide=Potri.012G041400.6.p locus=Potri.012G041400 ID=Potri.012G041400.6.v4.1 annot-version=v4.1
ATGGAGTCGAGGGGGGTGGCGAGCCACAGCAACATTGTTAGCAGCAGAGAAAAGAGGGCTAAACGCAGAGAGATACTGGAAAAGAAGAAGGCAATTGATG
AATTGATAAAAGCAGCATCTTCTGAGAAGGACCATCTTGTTTATTTCCAACCATTTTGTCATTACAATAGAAACGGTCTGTCTGTGTTTTTAGAATCTGG
AAGTGGGGATAAACTTTCCTCTTCTGTAAAGCGGTACATTCAAAACCTCCTTAAGGTCAATATGGAGGTGGCGTTTGGTCCTGAGTGGTCATCAGAAGAA
AAGGTGAAGTGTAGGGACATGGTTGCTTCAGAAGCGCGTTATATATTTGTTCACGAGGCTCCAAATGCTAGTGTTGATGAAATTTCAATGAAGTTAGATA
AAAGCCCCTTGGTTGGATTTGTACATTATCGCTTTACTCTTGAGGAAGATATACCTGTTCTTTATGTGTATGAAATACAGCTCGAGTCTCATGTCCAAGG
GAAGGGATTGGGGAAATTCCTTATGCAACTAATTGAGCTTATTGCTCGCAAGAGCTGCATGGGTGCTGTAGTATTAACAGTTCAAAAAGCGAATGCAGTA
GCCATGAATTTCTACAGAAGTAAGCTGAGATACACAATATCAAGCATTTCACCATCCAGAGTTGATCCCTTGATGGGTCTTGAGAAGAGTTACGAGATTC
TCTGCAAAGCATTCGACCATGAAGCCAAAGTTATATTGGAGGGGAGTGGATGA
AA sequence
>Potri.012G041400.6 pacid=42783130 polypeptide=Potri.012G041400.6.p locus=Potri.012G041400 ID=Potri.012G041400.6.v4.1 annot-version=v4.1
MESRGVASHSNIVSSREKRAKRREILEKKKAIDELIKAASSEKDHLVYFQPFCHYNRNGLSVFLESGSGDKLSSSVKRYIQNLLKVNMEVAFGPEWSSEE
KVKCRDMVASEARYIFVHEAPNASVDEISMKLDKSPLVGFVHYRFTLEEDIPVLYVYEIQLESHVQGKGLGKFLMQLIELIARKSCMGAVVLTVQKANAV
AMNFYRSKLRYTISSISPSRVDPLMGLEKSYEILCKAFDHEAKVILEGSG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G18335 Acyl-CoA N-acyltransferases (N... Potri.012G041400
[exp]
0 1
AT2G29260 NAD(P)-binding Rossmann-fold s... Potri.001G244900
[exp]
1.41 0.8475
AT2G28150 Domain of unknown function (DU... Potri.009G005800
[exp]
2.82 0.8296
AT1G47820 unknown protein Potri.014G121300
[exp]
4.00 0.8175
AT3G47490 HNH endonuclease (.1.2.3) Potri.009G004200
[exp]
6.48 0.8219
AT5G01650 Tautomerase/MIF superfamily pr... Potri.016G126500
[exp]
9.27 0.7014
AT5G53860 EMB64, EMB2737 EMBRYO DEFECTIVE 64, embryo de... Potri.011G118000
[exp]
10.72 0.8034
AT5G63980 SUPO1, RON1, AL... suppressors of PIN1 overexpres... Potri.007G105100
[exp]
16.43 0.7682
AT1G16080 unknown protein Potri.001G040100
[exp]
17.37 0.6727
AT5G38890 Nucleic acid-binding, OB-fold-... Potri.013G050400
[exp]
21.90 0.7449
AT4G19140 unknown protein Potri.003G103000
[exp]
24.24 0.6340

Potri.012G041400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.