Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1) AT2G37440 351 / 6e-117 DNAse I-like superfamily protein (.1.2) AT1G05470 285 / 1e-89 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT2G32010 282 / 1e-88 CVL1 CVP2 like 1 (.1.2) AT5G04980 271 / 2e-86 DNAse I-like superfamily protein (.1.2) AT5G65090 272 / 3e-86 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT3G63240 269 / 4e-84 DNAse I-like superfamily protein (.1) AT4G18010 259 / 1e-79 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT1G34120 257 / 3e-79 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT1G71710 241 / 1e-72 DNAse I-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G032200 [exp] 716 / 0 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.010G101700 [exp] 468 / 6e-163 AT2G01900 537 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G139600 [exp] 453 / 2e-157 AT2G01900 521 / 0.0 DNAse I-like superfamily protein (.1) Potri.010G247800 [exp] 315 / 1e-102 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.008G011000 [exp] 311 / 2e-101 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.017G074200 [exp] 291 / 2e-93 AT2G37440 328 / 8e-108 DNAse I-like superfamily protein (.1.2) Potri.008G155700 [exp] 282 / 6e-89 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.005G212700 [exp] 281 / 1e-88 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.007G090200 [exp] 281 / 2e-88 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031310 [exp] 354 / 7e-120 AT2G01900 320 / 3e-107 DNAse I-like superfamily protein (.1) Lus10025305 [exp] 332 / 1e-108 AT2G37440 481 / 8e-167 DNAse I-like superfamily protein (.1.2) Lus10024427 [exp] 331 / 1e-102 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2) Lus10006597 [exp] 282 / 3e-91 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10028884 [exp] 275 / 2e-87 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10008934 [exp] 267 / 4e-87 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2) Lus10006904 [exp] 276 / 2e-86 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10039352 [exp] 275 / 8e-86 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10034857 [exp] 271 / 2e-85 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10033398 [exp] 270 / 1e-84 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.012G041600.2 pacid=42782726 polypeptide=Potri.012G041600.2.p locus=Potri.012G041600 ID=Potri.012G041600.2.v4.1 annot-version=v4.1 ATGTTCGTTGGGGTCTGGGCATTCCAGTTCATGGAGTCTCTCATTTCTCCTATAAAATTATCCAGTTGCAGACAGGTCATGTGGCCTGAGTTTGTGGCTA GCAAGATCCTGAGGAATATGTTGGGTAGCAACAACTTGGTTGTAGACCTTCCAAATTCCACAGAGACCATGTTAGAGCTAGAAGAAACTTCTAGCTCTTC GGTTCCACCTTCGCTCATCAGTTCCAAGAAATACATCACTGATGATCAGGATAAACACAAGATCTTTGTTGGCACATGGAATGTTGGAGGCATTGCACCA CCTGATGATTTGAACATGGAAGATTGGTTATGCACACGGACTGAACCTGCTGATATCTATGTTCTTGGGTTCCAAGAAGTCGTGCCTCTCAGTGCTGGAA ACGTTGTTCCAGGTTTTGAAAACAGCAAGATTTGCACCAAATGGAATTCTCTTATCAGAGAAGCTCTGAACAATAGTACTTCGAAACCTGTTCACGAAGA TAAGGTAGGAGAGTTTCAAAAGGTGCTCCCCGTGAAGAAAAATAGGAGTAGTAATTCTCTCGGCAAAAGCAGCAATATTTTTCCTCACTGCTTTGATTGT ATCATAAGTAAGCAAATGGTTGGAATTTTTATCACTATTTGGGTTCGAGGTGATCTCCTTCCATACATACAACAAGCTAGTGTCTCATGTGTAGGCTGTG GCATCATGGGCTGCCTAGGCAACAAGGGATCTGTCTCAGTTAGGTTTTGCTTGCATGAAACAAGCTTATGTTTTGTGTGTAGTCATCTGGCTTCTGGAGG GAAAGAAGGAGATGAAAAGAGTAGAAATGCCGACGCTACGGAAATCTTGTCACGCACAAGATTTTCTCGTGGCCCCTTGCGCAATTTGCCACGCAAGATT CTTGATCACGATCAGGTAATCTGGCTTGGAGATTTGAACTACAGGATATACCTGCCTGATACTAAAACAAGATATTTAGTACAGAAAAAAGAGTGGAACA TCATGTTAGAAAAGGATCAGCTTAAGGCCGAGCTCATGGAAGGTCATGTATTCCAAGGTTGGAATGAAGGAAAAATTGAATTTGCACCTACTTACAAGTA CTATCAGAATTCACAAGTCTACTATGGCTGTGATCAGAAGAGGAAGGGTGAAAAGAATCGTGCTCCTGCATGGTGCGATCGAATAATTTGGTTTGGAAAG GGACTGAAGCAGAAACAATACAGCAGAGGTGAATCTAGATTGTCTGACCATAGACCTGTCCGGGCAATCTTCACAGCAGAAATCGAAGTCTTAAGTAATT CCAGGAGATTAGGAAGCTCTTTTCCAGGCAGATTCGATTGCTTAAGAAACCATTTTGAAGCATGTAATGACAGAACAAGCTTCTATTTACAAGAATAA
AA sequence Show only first row Show all	>Potri.012G041600.2 pacid=42782726 polypeptide=Potri.012G041600.2.p locus=Potri.012G041600 ID=Potri.012G041600.2.v4.1 annot-version=v4.1 MFVGVWAFQFMESLISPIKLSSCRQVMWPEFVASKILRNMLGSNNLVVDLPNSTETMLELEETSSSSVPPSLISSKKYITDDQDKHKIFVGTWNVGGIAP PDDLNMEDWLCTRTEPADIYVLGFQEVVPLSAGNVVPGFENSKICTKWNSLIREALNNSTSKPVHEDKVGEFQKVLPVKKNRSSNSLGKSSNIFPHCFDC IISKQMVGIFITIWVRGDLLPYIQQASVSCVGCGIMGCLGNKGSVSVRFCLHETSLCFVCSHLASGGKEGDEKSRNADATEILSRTRFSRGPLRNLPRKI LDHDQVIWLGDLNYRIYLPDTKTRYLVQKKEWNIMLEKDQLKAELMEGHVFQGWNEGKIEFAPTYKYYQNSQVYYGCDQKRKGEKNRAPAWCDRIIWFGK GLKQKQYSRGESRLSDHRPVRAIFTAEIEVLSNSRRLGSSFPGRFDCLRNHFEACNDRTSFYLQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01900			DNAse I-like superfamily prote...		Potri.012G041600 [exp]	0	1
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.006G058200 [exp]	2.44	0.9835	Pt-CYP93.2
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.011G010000 [exp]	4.69	0.9806
AT2G01900			DNAse I-like superfamily prote...		Potri.015G032200 [exp]	5.47	0.9790
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.006G057900 [exp]	6.00	0.9788
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G041800 [exp]	7.07	0.9784
AT3G06880			Transducin/WD40 repeat-like su...		Potri.005G240100 [exp]	8.83	0.9690
AT2G23770			protein kinase family protein ...		Potri.009G010300 [exp]	10.58	0.9744
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Potri.013G027700 [exp]	12.36	0.9652
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176100 [exp]	12.36	0.9722	2OGox3
AT1G61050			alpha 1,4-glycosyltransferase ...		Potri.004G039300 [exp]	14.96	0.9666

Compare expression of checked genes

Potri.012G041600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.