Plant FIBer expression Database

Potri.012G041700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G58130 298 / 3e-102 N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein (.1.2)
AT2G27340 286 / 2e-97 N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034805
[exp]
274 / 2e-93 AT3G58130 260 / 5e-88 N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02585 PIG-L GlcNAc-PI de-N-acetylase
Representative CDS sequence
>Potri.012G041700.1 pacid=42782494 polypeptide=Potri.012G041700.1.p locus=Potri.012G041700 ID=Potri.012G041700.1.v4.1 annot-version=v4.1
ATGGGATGGAGTTTTGTTGTTGTTTCGCTAATTGTACTTTGGATTGCTTCTTTATGGAAAGTTCTTTTCTCGTCATCATCAACTTCATCCTCAAAGACTT
CATTTCTGAGTGATGATAGAGCTCTTTCCAAGAGAAATGTCTTGCTTGTTGTTGCACACCCAGACGATGAGTCCATGTTCTTCTCACCAACTATAAACTA
TTTGATTTCCAGAGGGCATAATCTTTACATACTATGCTTTTCAATTGGCAATGCAGATGGTATGGGAAACACTAGAAAAGACGAGTTCTACCAGGCTTGT
GCCGTCCTCAAGGTTCCACTTCAACAGGTGAAGGTTCTAGACCATCCAGATTTGCAGGATGGTTTTGGCAAAGTCTGGGACCATGAATTGTTGGCAAAGA
TCATTGAAGAGGAGGTATCTAGTCATGGCATTGACATGATTATTACTTTTGATAACTATGGGGTTTCCGGTCATTGTAATCATCGTGATGTTCATTATGG
AGTGTGCCAGCTCCTGCACAATGTTTCAGAAAGAAGTGTGGAAGCCTGGGAACTTATCAGTACCTGCATTTTGCGGAAGTACAGTGGACCTGTTGATATT
TGGTTGTCCATGTTATTATCATTGAGATACACTGATGGAATGACACACTGCCTGCTAAATGAGCATCCCCGGAAGAGCTTCCATGCTATGGCAGAACATT
CAAGCCAATGGGTTTGGTTCCGCAAGCTTTTTGTATCATTTTCCAGTTATACTTACGTGAACACGCTTAGAAAGGTCGAGGAGGTAAAGCAGAGTTGA
AA sequence
>Potri.012G041700.1 pacid=42782494 polypeptide=Potri.012G041700.1.p locus=Potri.012G041700 ID=Potri.012G041700.1.v4.1 annot-version=v4.1
MGWSFVVVSLIVLWIASLWKVLFSSSSTSSSKTSFLSDDRALSKRNVLLVVAHPDDESMFFSPTINYLISRGHNLYILCFSIGNADGMGNTRKDEFYQAC
AVLKVPLQQVKVLDHPDLQDGFGKVWDHELLAKIIEEEVSSHGIDMIITFDNYGVSGHCNHRDVHYGVCQLLHNVSERSVEAWELISTCILRKYSGPVDI
WLSMLLSLRYTDGMTHCLLNEHPRKSFHAMAEHSSQWVWFRKLFVSFSSYTYVNTLRKVEEVKQS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G58130 N-acetylglucosaminylphosphatid... Potri.012G041700
[exp]
0 1
AT1G60940 SNRK2-10, SNRK2... SNF1-RELATED KINASE 2B, SUCROS... Potri.004G218001
[exp]
1.41 0.9352
AT1G11890 ATSEC22, SEC22 SECRETION 22, Synaptobrevin fa... Potri.001G165600
[exp]
2.00 0.9307 Pt-SEC22.1
AT1G01230 ORMDL family protein (.1) Potri.002G174400
[exp]
5.91 0.8971
AT5G55000 FIP2 potassium channel tetramerisat... Potri.019G038400
[exp]
6.00 0.8749
AT4G25600 Oxoglutarate/iron-dependent ox... Potri.012G142800
[exp]
6.92 0.9025
AT3G15395 unknown protein Potri.001G402000
[exp]
8.00 0.8756
AT2G17990 unknown protein Potri.005G115500
[exp]
8.06 0.9044
AT5G07960 unknown protein Potri.015G056300
[exp]
12.00 0.8853
AT4G38240 GNTI, CGL1 N-ACETYLGLUCOSAMINYLTRANSFERAS... Potri.004G206900
[exp]
13.26 0.8471
AT5G25760 PEX4, UBC21 ubiquitin-conjugating enzyme 2... Potri.018G039200
[exp]
13.49 0.8840

Potri.012G041700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.