Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NANN.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68090 359 / 2e-124 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) AT5G65020 239 / 2e-77 ANNAT2 annexin 2 (.1.2) AT5G10230 236 / 3e-76 ANN7, ANNAT7 annexin 7 (.1) AT5G10220 230 / 6e-74 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT5G12380 226 / 3e-72 ANNAT8 annexin 8 (.1) AT1G35720 211 / 2e-66 ATOXY5, ANNAT1 annexin 1 (.1) AT2G38760 173 / 7e-52 ANN3, ANNAT3 annexin 3 (.1) AT2G38750 116 / 5e-30 ANNAT4 annexin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G031800 [exp] 560 / 0 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.008G139500 [exp] 352 / 8e-122 AT1G68090 363 / 4e-126 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.010G101800 [exp] 335 / 4e-114 AT1G68090 343 / 3e-117 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.005G075900 [exp] 233 / 3e-75 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.007G092500 [exp] 232 / 1e-74 AT5G65020 488 / 2e-175 annexin 2 (.1.2) Potri.002G095600 [exp] 226 / 3e-72 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.003G200700 [exp] 219 / 2e-69 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.001G024800 [exp] 214 / 2e-67 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.001G277500 [exp] 196 / 1e-60 AT5G12380 442 / 3e-157 annexin 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023530 [exp] 493 / 3e-177 AT1G68090 350 / 4e-121 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10009225 [exp] 463 / 1e-165 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10040415 [exp] 432 / 7e-154 AT1G68090 306 / 2e-104 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10037992 [exp] 422 / 1e-149 AT1G68090 321 / 6e-110 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10031942 [exp] 342 / 1e-117 AT1G68090 353 / 2e-122 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10035101 [exp] 338 / 2e-116 AT1G68090 352 / 1e-121 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10024054 [exp] 219 / 1e-69 AT5G65020 400 / 6e-141 annexin 2 (.1.2) Lus10008227 [exp] 219 / 2e-69 AT1G35720 476 / 9e-171 annexin 1 (.1) Lus10003611 [exp] 218 / 4e-69 AT1G35720 476 / 1e-170 annexin 1 (.1) Lus10041696 [exp] 211 / 2e-66 AT5G65020 395 / 2e-138 annexin 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [poplar] [flax] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Potri.012G041900.2 pacid=42782691 polypeptide=Potri.012G041900.2.p locus=Potri.012G041900 ID=Potri.012G041900.2.v4.1 annot-version=v4.1 ATGTCAACTTTGATTGTTCCGCCACTGCTTTCATCCCCTAGAGATGATGCAATGCATCTCTACCGTGCTTTTAAGGGATTTGGAACTGACACATCTGCCG TGATCAGTATCCTGGCTCATCGAGATGCAGCTCAGCGTGCTCTCATCCAACATGAGTACAGAGCTTTGTACGCTGAGGATCTTCTTAAACGCTTGACTTC GGAGCTTACTGGCAAATTGGAGACAGCAGTTCTGTTGTGGATGCATGATCTACCTGGTCGTGATGCAATTATTGTCAGGCAGGCACTTATAGCAGATATA TTGAATCTGGAAACTGCAACTGAAGTAATTTGTTCTCGCACGTCATCCCAGATACAAGTATTTAAACAGCATTACTATGCAAAATTTGGGGTTCATCTTG AGCATGATATTGAATTACGGGCATCTGGAGACCATAAAAAGCTCCTGCTAGCATATGTAAGCACGCCTCGTTATGAAGGCCGTGAAGTTGACAGAAATAT GGTTGAGAAGGATGCAAAGGCTCTTTATAAAGCAGGTGAGAAGAGATTGGGAACTGATGAGATGACTTTCATCCGCGTATTCAGTGAACGAAGTGCAGCA CATTTGGCTGCTGTTGATTCTGCCTATCACAACATGTATGGAAACTCTCTGAAAAAGGCTATAAAGAAGGAAACTTCAGGACATTTTGAGCATGCTTTGA AGACAATTTTACAATGCTCAGAGAATCCGGCAAAGTACTTTGTCAAGTTGCTGCGCAAGGCGATGAAAGGCCTGGGAACCAATGACACTGCCCTTATAAG GGTAATTGTGACAAGGACTGAGATTGACATGCAATATATAAAAGCTGAATATCTGAAGAAGTACAGAAAGACATTGAACGATGCCGTTCACTCAGAAACT TCAGGTCATTACAGAGCTTTCCTTCTCGCTCTCTTGGGGCCCAACCAGTAG
AA sequence Show only first row Show all	>Potri.012G041900.2 pacid=42782691 polypeptide=Potri.012G041900.2.p locus=Potri.012G041900 ID=Potri.012G041900.2.v4.1 annot-version=v4.1 MSTLIVPPLLSSPRDDAMHLYRAFKGFGTDTSAVISILAHRDAAQRALIQHEYRALYAEDLLKRLTSELTGKLETAVLLWMHDLPGRDAIIVRQALIADI LNLETATEVICSRTSSQIQVFKQHYYAKFGVHLEHDIELRASGDHKKLLLAYVSTPRYEGREVDRNMVEKDAKALYKAGEKRLGTDEMTFIRVFSERSAA HLAAVDSAYHNMYGNSLKKAIKKETSGHFEHALKTILQCSENPAKYFVKLLRKAMKGLGTNDTALIRVIVTRTEIDMQYIKAEYLKKYRKTLNDAVHSET SGHYRAFLLALLGPNQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.012G041900 [exp]	0	1	NANN.1
AT2G24130			Leucine-rich receptor-like pro...		Potri.018G103400 [exp]	5.00	0.8666
AT1G69060			Chaperone DnaJ-domain superfam...		Potri.008G109100 [exp]	6.24	0.8010
AT3G47570			Leucine-rich repeat protein ki...		Potri.006G273001 [exp]	7.74	0.8587
AT2G38870			Serine protease inhibitor, pot...		Potri.010G075200 [exp]	8.30	0.8561
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.012G001400 [exp]	9.89	0.8464	NAC015
AT4G00900		ATECA2, ECA2	ER-type Ca2+-ATPase 2, ARABIDO...		Potri.014G101900 [exp]	10.58	0.8421	Pt-ECA2.1
AT1G06210			ENTH/VHS/GAT family protein (....		Potri.002G038000 [exp]	11.78	0.7540
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.016G129100 [exp]	13.56	0.8507
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.001G389100 [exp]	18.81	0.8504	PSCLRR52.53
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.006G002600 [exp]	20.12	0.8504

Compare expression of checked genes

Potri.012G041900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.