Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14670 762 / 0 Endomembrane protein 70 protein family (.1) AT5G37310 752 / 0 Endomembrane protein 70 protein family (.1) AT2G01970 752 / 0 Endomembrane protein 70 protein family (.1) AT1G08350 461 / 1e-156 Endomembrane protein 70 protein family (.1.2) AT1G10950 311 / 2e-98 AtTMN1 transmembrane nine 1 (.1) AT2G24170 259 / 5e-78 Endomembrane protein 70 protein family (.1) AT3G13772 241 / 2e-71 AtTMN7 transmembrane nine 7 (.1) AT1G55130 235 / 5e-69 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT5G10840 234 / 1e-68 Endomembrane protein 70 protein family (.1) AT5G25100 231 / 2e-67 Endomembrane protein 70 protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G144241 [exp] 761 / 0 AT5G37310 989 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144181 [exp] 756 / 0 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G075450 [exp] 734 / 0 AT5G37310 953 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G203200 [exp] 464 / 8e-158 AT1G08350 671 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.004G075525 [exp] 425 / 5e-146 AT5G37310 523 / 0.0 Endomembrane protein 70 protein family (.1) Potri.003G015300 [exp] 336 / 6e-108 AT1G10950 897 / 0.0 transmembrane nine 1 (.1) Potri.004G218300 [exp] 336 / 7e-108 AT1G10950 920 / 0.0 transmembrane nine 1 (.1) Potri.003G038700 [exp] 256 / 6e-77 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.018G018400 [exp] 237 / 8e-70 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031308 [exp] 788 / 0 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031876 [exp] 785 / 0 AT2G01970 1059 / 0.0 Endomembrane protein 70 protein family (.1) Lus10042286 [exp] 778 / 0 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10026371 [exp] 672 / 0 AT2G01970 912 / 0.0 Endomembrane protein 70 protein family (.1) Lus10004873 [exp] 445 / 3e-150 AT1G08350 668 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10001368 [exp] 309 / 2e-97 AT1G10950 990 / 0.0 transmembrane nine 1 (.1) Lus10001291 [exp] 302 / 8e-95 AT1G10950 1000 / 0.0 transmembrane nine 1 (.1) Lus10012697 [exp] 283 / 1e-86 AT1G10950 947 / 0.0 transmembrane nine 1 (.1) Lus10015463 [exp] 268 / 3e-82 AT1G10950 910 / 0.0 transmembrane nine 1 (.1) Lus10015624 [exp] 261 / 9e-79 AT3G13772 1133 / 0.0 transmembrane nine 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [poplar] [flax] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Potri.012G042300.1 pacid=42784387 polypeptide=Potri.012G042300.1.p locus=Potri.012G042300 ID=Potri.012G042300.1.v4.1 annot-version=v4.1 ATGATGGCGGAGAAGATATTACCGGTGACTTTATTCGTCTCCGTTTTGTTAGTCTTGAGTGTGGACCAGGCTAGTTCAGATGAACCAGATCATCGGTACA GACAAGGAGACCAGGTTCCCTTCTATGTTAACAAAGTCGGACCCTTTCACAATCCTAGCGAAACCTACCGTTATTTTGATCTTCCGTATTGCTTGCCAGA TAGTGCGAAGGAGAAAAGGCTGTCTCTTGGTGAAGTACTGAATGGCGATCGTTTGGTAAGTGGGCCTTTCCCTATTGAATTTCTACGCGAAAGAAAATCT GTACCTGTTTGCAAGAAGAAGTTATCAAAGGAAGATGTTGCCAAGTTTCGAGCTGTTGTTCATGAGGACTATTATTATCAAATGTATTTTGATGACTTGC CCAACTGGGTGTTCTTGGGGATGGTTGATAAGAGGCAACAAAGATACTACCTGTTCAATCATATCCATTTAAATATTTATTACAATAAGGATCGTGTGAT TGAGATTACGTCTCACACGCATACGAATGCGGTGGTGGAACTTACTGAGGATAAAGAGGTAGATGTGGAGTTTCTGTCTACAGTGGAGTGGAATGAAACA GATTTCCCTTTTGAGAAGAGGATGACTAAGTACTCTCAGTCATCTTCGTTGCCTCGTCATTTAGAGATCCATCGGAATTCCGTTATAAATTCATGCATGG CAGTTCTTCTTCTTGCTGGATTTCTTGCCGCAATCTTGCGAATCCTTAACAATGACTCTGTCAAATATGCTAATGACGAGGAATTAGCCGCAGATCAGGA AGAGACTGGTTGGAAATGCATTCATGGAGATGTATTTAGGTATCCCAAGCACAAGTCTCTGTTTGCAGCCTGCCTCGGTTCCGGAACCCAGCTATTGACT CTCACGGTCTTCATTTTTATTTTGGCACTCGTAGGAGTGTTTTATCCATACAACCGGGGGGCTTTACTCACCGCATTGGTTGTCTTATATGCTCTCACAT CAGGAATTGCAGGATACACAGCAACCTCATTTTACTGTCAGCTTGGAGGAACAAACTGGGTTAGAAATCTATTGTTGACAGGATGTCTCTTCTGTGGACC TCTCTTCCTCACATTTTGCTTCCTGAATGCTGTTGCAGTTGCTTATACTGCCACTGCAGCTCTTCCTCTTGGCACGATTGTTGTGATAGCTCTTATATGG ACACTTGTATCATCTCCTTTGCTCGTTTTAGGTGGAATTATTGGGAAGAATAGCAAGGCTGAGTTCCAAGCTCCTTGTCGCACCGCCGAATATCCCAGAG AGATTCCACCATTGCGATGGTATCGGCAAACAATTCCTCAAATGGCAATTGCGGGATTTCTGCCATTCATTCTTATACAGACCGAACTTTACTACATCTT TGCTAGTGTGTGGGGTCACAGGATTTATACCTTTTACAGCTTCTTGTTCATCATCTTTATTACTCTTCTGATAGTCACTGCTTTAATTACGGCCACATTG ACCCATTTACAACTTGCTGCTGAGGACCACAGATGGTGGTGGAGGTCTTTTCTCTGTGGCGGATCAACTGGCTTATTTATATATGCCTACTGCTTTTATT ACTACTACGCACTCTCAGATATGTCTGGTTTCATGCAAACCTCCTTCATATTTGGGTACATGGCTTGCATCTCTTTTGGCTGCTTCCTTATGCTGGGCAC TGTAGGTTATCTTGCAGCTTTGCGTTTTGTCCGGCATGTATATGGTTCAATCAAGTGTGAGTAG
AA sequence Show only first row Show all	>Potri.012G042300.1 pacid=42784387 polypeptide=Potri.012G042300.1.p locus=Potri.012G042300 ID=Potri.012G042300.1.v4.1 annot-version=v4.1 MMAEKILPVTLFVSVLLVLSVDQASSDEPDHRYRQGDQVPFYVNKVGPFHNPSETYRYFDLPYCLPDSAKEKRLSLGEVLNGDRLVSGPFPIEFLRERKS VPVCKKKLSKEDVAKFRAVVHEDYYYQMYFDDLPNWVFLGMVDKRQQRYYLFNHIHLNIYYNKDRVIEITSHTHTNAVVELTEDKEVDVEFLSTVEWNET DFPFEKRMTKYSQSSSLPRHLEIHRNSVINSCMAVLLLAGFLAAILRILNNDSVKYANDEELAADQEETGWKCIHGDVFRYPKHKSLFAACLGSGTQLLT LTVFIFILALVGVFYPYNRGALLTALVVLYALTSGIAGYTATSFYCQLGGTNWVRNLLLTGCLFCGPLFLTFCFLNAVAVAYTATAALPLGTIVVIALIW TLVSSPLLVLGGIIGKNSKAEFQAPCRTAEYPREIPPLRWYRQTIPQMAIAGFLPFILIQTELYYIFASVWGHRIYTFYSFLFIIFITLLIVTALITATL THLQLAAEDHRWWWRSFLCGGSTGLFIYAYCFYYYYALSDMSGFMQTSFIFGYMACISFGCFLMLGTVGYLAALRFVRHVYGSIKCE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14670			Endomembrane protein 70 protei...		Potri.012G042300 [exp]	0	1
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G002200 [exp]	1.73	0.7909	Pt-CNGC.2
AT5G52430			hydroxyproline-rich glycoprote...		Potri.001G102200 [exp]	6.32	0.7579
AT1G34470			Protein of unknown function (D...		Potri.001G253100 [exp]	7.00	0.7497
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.003G185050 [exp]	7.74	0.7499
AT5G45290			RING/U-box superfamily protein...		Potri.002G140500 [exp]	9.59	0.6778
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.001G219500 [exp]	9.79	0.7293
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Potri.006G027700 [exp]	10.00	0.7343
AT4G17900			PLATZ transcription factor fam...		Potri.001G141500 [exp]	10.67	0.7670
AT3G17940			Galactose mutarotase-like supe...		Potri.017G129300 [exp]	11.87	0.7606
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.016G059700 [exp]	14.00	0.6917

Compare expression of checked genes

Potri.012G042300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.