Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48450 477 / 3e-168 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) AT3G17800 471 / 2e-165 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) AT1G32160 298 / 3e-98 Protein of unknown function (DUF760) (.1) AT3G07310 180 / 6e-53 Protein of unknown function (DUF760) (.1) AT5G48590 176 / 2e-51 Protein of unknown function (DUF760) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G031200 [exp] 660 / 0 AT1G48450 490 / 6e-173 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) Potri.003G097400 [exp] 356 / 1e-120 AT1G32160 488 / 3e-172 Protein of unknown function (DUF760) (.1) Potri.002G247700 [exp] 203 / 3e-61 AT3G07310 380 / 9e-131 Protein of unknown function (DUF760) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017989 [exp] 490 / 6e-173 AT3G17800 486 / 5e-171 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) Lus10041984 [exp] 489 / 2e-172 AT3G17800 494 / 3e-174 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) Lus10035392 [exp] 342 / 5e-115 AT1G32160 433 / 6e-151 Protein of unknown function (DUF760) (.1) Lus10030993 [exp] 298 / 1e-97 AT1G32160 390 / 4e-134 Protein of unknown function (DUF760) (.1) Lus10000084 [exp] 226 / 5e-72 AT1G32160 304 / 5e-103 Protein of unknown function (DUF760) (.1) Lus10025896 [exp] 185 / 2e-54 AT3G07310 423 / 1e-147 Protein of unknown function (DUF760) (.1) Lus10038208 [exp] 183 / 2e-53 AT3G07310 407 / 3e-141 Protein of unknown function (DUF760) (.1) Lus10002343 [exp] 173 / 5e-50 AT3G07310 348 / 8e-119 Protein of unknown function (DUF760) (.1) Lus10002342 [exp] 170 / 4e-49 AT3G07310 332 / 2e-112 Protein of unknown function (DUF760) (.1) Lus10003162 [exp] 160 / 3e-45 AT3G07310 340 / 1e-115 Protein of unknown function (DUF760) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05542 [poplar] [flax] DUF760 Protein of unknown function (DUF760)
Representative CDS sequence Show only first row Show all	>Potri.012G042400.2 pacid=42783696 polypeptide=Potri.012G042400.2.p locus=Potri.012G042400 ID=Potri.012G042400.2.v4.1 annot-version=v4.1 ATGGAAGCAGCTACAGCAACATTTATTGGATCTTCAATTGGGATCTGTAGACCTGCAAAATCTGTTGCTAGATCGGGTTTTTTAGCTACCATTGGGCAAG ATTTTGTGCGTTTTCCTCATAAGCATTGTTCTTCAGTTTCATACTCGAAGCCAGGTCATAGGAGAGTGGCATATGGAAGCAGGAGATGTATGGGAGTGAG AGCATCATTGTCATCGTCTTCAGATTCATCGGGATCAATTGCATCAATTGCTCCACTTCAGCTTGAATCTCCAGTAGGGCAGTTCTTATCTCAGATTTTG ATTAGTCACCCGCATCTTGTGCCAGCAGCAGTGGAGCAGCAACTTGAGCAACTTCAAACTGATCGTGATGCTGAGAAACAGAAGGAAGAGCCTTCTGCCA CTAGCACTGATTTGGTATTATATAGGAAAATTGCTGAGGTGAAAGCTAATGAGAGGAGAAAAGCTCTAGAAGAGATTTTGTATGCATTGGTTGTGCAGAA GTTCATGGATGCCAATGTTTCTTTGATATCCACCATGGCCTCCTCTTCCACAGACCCATCTGGTGGAGTGGACACTCGGCCAAGCCAAGATGAGAAGCTT GAGCGACTCCACTCTCCTGAAGCCTATGATATGATTCAGAACCATCTAGCTCTCATTTTGGGAAATCGGATGGGAGATTCTACTGCTGTTGCTCAGATAA ACAAACTCAGGGCTGGACAGGTCTATGCAGCTTCTGTGATGTATGGATACTTCCTAAAGCGAGTTGATCAAAGGTTTCAGCTTGAGAAGACAATGAAAAT CCTCCCAAATGCTGTGGATGAGGGAGAAACAGATATTCGTAAAGTTGTGTCTTCCCATCCTGAAGCCTTTTCTGATGGTGTTAGTCCTGGAGGACTTGGA CATGGATTAAAGGCTTCCCGATTGCGGAATTATGTGATGTCTTTTGATGGGGAAACACTTCAGAGGTATGCAACAATAAGATCGAAAGAGGCTGTTAGCC TTATTGAGAAGCACACTGAGGCCTTGTTTGGAAGACCTGAGATTGTCATAGCACTTCAAGGGACTATTGATTCTTCCAAGGATGAACTAGTCAAGATCAG CTTTGGTGGTTTGAAAAGACTTGTTCTGGAAGCTGTAACTTTTGGTTCTTTCCTCTGGGATGTAGAGAGCTATGTGGATTCAAGATATCACTTTGTTCTG AATTGA
AA sequence Show only first row Show all	>Potri.012G042400.2 pacid=42783696 polypeptide=Potri.012G042400.2.p locus=Potri.012G042400 ID=Potri.012G042400.2.v4.1 annot-version=v4.1 MEAATATFIGSSIGICRPAKSVARSGFLATIGQDFVRFPHKHCSSVSYSKPGHRRVAYGSRRCMGVRASLSSSSDSSGSIASIAPLQLESPVGQFLSQIL ISHPHLVPAAVEQQLEQLQTDRDAEKQKEEPSATSTDLVLYRKIAEVKANERRKALEEILYALVVQKFMDANVSLISTMASSSTDPSGGVDTRPSQDEKL ERLHSPEAYDMIQNHLALILGNRMGDSTAVAQINKLRAGQVYAASVMYGYFLKRVDQRFQLEKTMKILPNAVDEGETDIRKVVSSHPEAFSDGVSPGGLG HGLKASRLRNYVMSFDGETLQRYATIRSKEAVSLIEKHTEALFGRPEIVIALQGTIDSSKDELVKISFGGLKRLVLEAVTFGSFLWDVESYVDSRYHFVL N

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48450			Protein of unknown function (D...		Potri.012G042400 [exp]	0	1
AT4G01310			Ribosomal L5P family protein (...		Potri.002G154600 [exp]	4.47	0.9691
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.006G186800 [exp]	7.93	0.9605	Pt-ALDH11.2
AT1G29070			Ribosomal protein L34 (.1)		Potri.011G064800 [exp]	8.00	0.9670
AT1G50320		ATHX, ATX	thioredoxin X (.1)		Potri.007G074000 [exp]	9.59	0.9591
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.006G099900 [exp]	9.74	0.9170	CAX3.1
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Potri.001G420900 [exp]	15.49	0.9520
AT3G26650		GAPA-1, GAPA	GLYCERALDEHYDE 3-PHOSPHATE DEH...		Potri.002G220566 [exp]	15.65	0.9572
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.002G083300 [exp]	19.44	0.9423
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.008G220600 [exp]	20.29	0.9153
AT1G21350			Thioredoxin superfamily protei...		Potri.002G071000 [exp]	21.90	0.9516

Compare expression of checked genes

Potri.012G042400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.