Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31930 967 / 0 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT2G23460 699 / 0 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT4G34390 569 / 0 XLG2 extra-large GTP-binding protein 2 (.1) AT2G26300 177 / 1e-48 ATGPA1, GPALPHA1, GPA1 ,GP ALPHA 1 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) AT2G46380 48 / 3e-05 Protein of unknown function (DUF3133) (.1) AT4G01090 47 / 5e-05 Protein of unknown function (DUF3133) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G031100 [exp] 1353 / 0 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.001G135300 [exp] 1006 / 0 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 993 / 0 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.007G035200 [exp] 728 / 0 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.005G131200 [exp] 717 / 0 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.009G109400 [exp] 630 / 0 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.004G148300 [exp] 623 / 0 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1) Potri.006G219500 [exp] 178 / 6e-49 AT2G26300 645 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Potri.018G048600 [exp] 160 / 2e-42 AT2G26300 659 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010421 [exp] 953 / 0 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10012124 [exp] 947 / 0 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10019655 [exp] 739 / 0 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10000743 [exp] 699 / 0 AT2G23460 975 / 0.0 extra-large G-protein 1 (.1) Lus10021012 [exp] 645 / 0 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1) Lus10023838 [exp] 642 / 0 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1) Lus10003115 [exp] 168 / 4e-45 AT2G26300 663 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10004784 [exp] 166 / 2e-44 AT2G26300 665 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10009897 [exp] 54 / 3e-07 AT4G34390 52 / 3e-07 extra-large GTP-binding protein 2 (.1) Lus10024210 [exp] 49 / 1e-05 AT1G31930 52 / 2e-07 extra-large GTP-binding protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00503 [poplar] [flax] G-alpha G-protein alpha subunit
Representative CDS sequence Show only first row Show all	>Potri.012G042500.1 pacid=42783585 polypeptide=Potri.012G042500.1.p locus=Potri.012G042500 ID=Potri.012G042500.1.v4.1 annot-version=v4.1 ATGTCAACGACTACAGAACAAGGAAGCGAGTGGGAAGAAGTGATACGGAAGATGTTACCAGCAGGAGCACCGTTACCTGACGAAGATCATCTCGATTACT CAATCGCAGTAGAATACGAAGGTCCGCCAATTCCTTACGAAGTCCCTCGCATCGACCCGTTGAATCTTAATTTACTCCCAACTCGGGCTTCTTCTCTCGT TTCTACTGAAGAATCGAAATCAAAATCAAGCACTCCAGTTTCAAAATTCACTAGATTCAGTAACCAAAACGGTACCGCAAGAAGATTTTATCCAGCAAGA GTAGAGGTTGATGAAGGAAATCTTGAAAAAGAAGAGGAAATTGATAGAAGAGATGAAGGAAGGCGGGGGAATGCCGTTACGTTTAATACGCCGAAAGATT CGGAGACTGAGGAAGGGGATGAGGAGGATGATGGATATTCCTCCACAGCGACGGATGCTGATTTAAGCAGTACAAGGAAAGGAGTGAGGAGGAGGAAGGG TGGCGTTTGTAGTAGGTGTGGAAAGAAGAATAGATGGAAGGAGAGGGAATCGTGTTTGGCTTGTGAGAAGAGGTATTGTAGTAATTGTTTGTTGAAAGCG ATGGGATCAATGCCAGAAGGGAGGAAGTGTGTGAGTTGTATTGGGAAGCCGATTGATGAATCGAAGAGGTCGATTTTAGGCAAGTGTTCGAGGATTTTGG CGAGGGTTTGTAGTCCGCTGGAGGTTAGGCAGATAATGAAGGCTGAGAAGGAGTGTGCTGCGAATCAGTTGAGACCGGAGCAGTTGATTGTGAATGGGAG GCAGTTGAGACAAGAGGAACTGGCTGAGGTTTTGGGGTGTGCGTTTCCGCCGCAGAAGTTGAAGCCTGGCAAGTATTGGTATGATAAGGACTCGGGACTT TGGGGGAAGGAGGGAGAGAAACCAGATAGAATAATTAGTTCCAAATTGAATGTTGGGGGTAAGCTTAGGCTGGATGCTAGCAATGGGAATACAAAGGTTT ACATAAATGGCCGTGAGATTACCAAGACTGAGCTCAGAGTGTTGAAGCTTGCGAACGTACAGTGCCCCAAGGATACTCATTTCTGGTTGTATGATGATGG ATCTTATGAGGAAGAAGGCCAAAATAATATAAAGGGAAACATATGGGGAAAGGCATCTACTCGTTTCATCTGTTCATTATTTTCATTGCCTGTACCACCT GGAAATCCTAACGGGCCAAAAGAAGATCCTACTACCTTTTCAGGAAGGTCTGTGCCTGAGTATTTGGAGCAAGGAAGGATCCATAAACTTCTGTTATTCG GGTTAGAAGGATCTGGAACAAGTACCATTTTCAAGCAGGGCAAGTTTTTATATGGGAATAGGTTCACCCCTGAAGAGTTGCAGGACATCAAACTCATGAT TCAAAGCAATATGTACAGATATCTTAGCATATTGCTTGAAGGACGAGAGAGGTTTGAAGAGGAGGATCTGACGGAGAAGAGTACTGCTACAGTTAATTCT GAAGAATGTGCTTCAGGTGAAGGAGGCGAAACAAGTGAGAAATGCATCTACTCCATTAACCAAAGGTTCAAGCATTTTTCTGACTGGTTATTAGATATCA TGGCAACGGGAGATTTGGATGCATTTTTTCCTGCTGCAACACGAGAGTATGCTCCTATTGTGGATGAGGTCTGGAAGGACCCTGCCATTCAGGAAACGTA CAAGAGAAGGGAAGAATTGCATCATCTTCCTGTTGTTGCTAAATATTTCTTAGATCGGACCATTGAGATATCAAGCAATGAATATGAACCTTCAGAGAAG GACATTTTATATGCTGAAGGAGTCACACAGAACAACAGTCTTGCCTTCATGGAATTCACATTTGATGATAGAAGTCCCATGTCGGAGATATACAATGAAA ACTTTGACTGTACACCTCCCTTGACCAAGTACCAACTAATTCGCATAAATTCAAAGGGATTGCGTGATGGTTGCAAATGGCTGGAAATGTTTGAAGATGT GAGGGCAATTATCTTCTGTGTAGCCTTAAACGACTACGACCAGATTTGGGCTCATGGTACAGGTCCCCCTTGTAACAAAATGATTGCTAGTAGAGACTTG TTTGAGAGCCTGGTTAGGCACCCATGTTTTATGGACACCCCTTTCGTGCTTTTGCTGAACAAGTATGATGCATTGGAGGAAAAGATCAACCAGGTTCCTT TGTCAGCTTGCGAGTGGTTCGAGGACTTCCAGCCTTTGAAGCCCCATAACAATAGTCAAACCCTGGCGCAGCAAGCATACTTTTATGTGGCAGTGAAATT CAAGGAATTATATTTTTCACTTACTGGTCAGAAGCTGTTTGTATGTCAGACCAGAGCTAGGGAACGTACTTCAGTGGACGAAGCATTCAAGTACATAAGG GAGGTCCTCAAATGGGATGAAGAAAAGCATGATAACGTGTATGGAATCCCTATGGATGACTCGTTTTATAGCACAGAAATGAGCTCCTCTCCATTTATCA GACAGGAATAG
AA sequence Show only first row Show all	>Potri.012G042500.1 pacid=42783585 polypeptide=Potri.012G042500.1.p locus=Potri.012G042500 ID=Potri.012G042500.1.v4.1 annot-version=v4.1 MSTTTEQGSEWEEVIRKMLPAGAPLPDEDHLDYSIAVEYEGPPIPYEVPRIDPLNLNLLPTRASSLVSTEESKSKSSTPVSKFTRFSNQNGTARRFYPAR VEVDEGNLEKEEEIDRRDEGRRGNAVTFNTPKDSETEEGDEEDDGYSSTATDADLSSTRKGVRRRKGGVCSRCGKKNRWKERESCLACEKRYCSNCLLKA MGSMPEGRKCVSCIGKPIDESKRSILGKCSRILARVCSPLEVRQIMKAEKECAANQLRPEQLIVNGRQLRQEELAEVLGCAFPPQKLKPGKYWYDKDSGL WGKEGEKPDRIISSKLNVGGKLRLDASNGNTKVYINGREITKTELRVLKLANVQCPKDTHFWLYDDGSYEEEGQNNIKGNIWGKASTRFICSLFSLPVPP GNPNGPKEDPTTFSGRSVPEYLEQGRIHKLLLFGLEGSGTSTIFKQGKFLYGNRFTPEELQDIKLMIQSNMYRYLSILLEGRERFEEEDLTEKSTATVNS EECASGEGGETSEKCIYSINQRFKHFSDWLLDIMATGDLDAFFPAATREYAPIVDEVWKDPAIQETYKRREELHHLPVVAKYFLDRTIEISSNEYEPSEK DILYAEGVTQNNSLAFMEFTFDDRSPMSEIYNENFDCTPPLTKYQLIRINSKGLRDGCKWLEMFEDVRAIIFCVALNDYDQIWAHGTGPPCNKMIASRDL FESLVRHPCFMDTPFVLLLNKYDALEEKINQVPLSACEWFEDFQPLKPHNNSQTLAQQAYFYVAVKFKELYFSLTGQKLFVCQTRARERTSVDEAFKYIR EVLKWDEEKHDNVYGIPMDDSFYSTEMSSSPFIRQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.012G042500 [exp]	0	1
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Potri.002G073400 [exp]	2.00	0.8061	Pt-SCL1.2
AT1G14740			Protein of unknown function (D...		Potri.010G102600 [exp]	3.87	0.8104
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.015G104000 [exp]	4.69	0.7822
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Potri.012G034300 [exp]	5.47	0.8126
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.003G196900 [exp]	6.00	0.8104
AT4G08310			unknown protein		Potri.005G176400 [exp]	7.34	0.7875
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Potri.017G044600 [exp]	8.83	0.8007
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Potri.003G129300 [exp]	11.61	0.7738
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.012G137500 [exp]	14.24	0.7938
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Potri.001G026000 [exp]	17.88	0.7897

Compare expression of checked genes

Potri.012G042500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.