Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37490 294 / 2e-95 ARM repeat superfamily protein (.1) AT1G66160 267 / 4e-85 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT3G02840 178 / 1e-51 ARM repeat superfamily protein (.1) AT3G52450 170 / 7e-48 PUB22 plant U-box 22 (.1) AT2G35930 167 / 4e-47 PUB23 plant U-box 23 (.1) AT3G19380 159 / 3e-44 PUB25 plant U-box 25 (.1) AT1G49780 154 / 3e-42 PUB26 plant U-box 26 (.1) AT3G11840 134 / 1e-34 PUB24 plant U-box 24 (.1) AT5G64660 110 / 2e-26 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT5G09800 104 / 2e-24 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G031000 [exp] 642 / 0 AT5G37490 323 / 9e-107 ARM repeat superfamily protein (.1) Potri.004G083900 [exp] 426 / 4e-147 AT5G37490 354 / 8e-119 ARM repeat superfamily protein (.1) Potri.017G135000 [exp] 421 / 5e-145 AT5G37490 375 / 4e-127 ARM repeat superfamily protein (.1) Potri.008G137700 [exp] 409 / 3e-140 AT5G37490 333 / 9e-111 ARM repeat superfamily protein (.1) Potri.010G103100 [exp] 383 / 4e-130 AT5G37490 315 / 1e-103 ARM repeat superfamily protein (.1) Potri.016G069400 [exp] 179 / 1e-51 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.006G202600 [exp] 176 / 2e-50 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.009G016100 [exp] 165 / 3e-46 AT3G11840 326 / 6e-108 plant U-box 24 (.1) Potri.009G016200 [exp] 163 / 9e-46 AT2G35930 475 / 4e-167 plant U-box 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001079 [exp] 398 / 9e-136 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1) Lus10040124 [exp] 211 / 2e-66 AT1G66160 154 / 6e-45 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) Lus10040125 [exp] 191 / 8e-58 AT3G02840 164 / 1e-48 ARM repeat superfamily protein (.1) Lus10021267 [exp] 164 / 1e-45 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10013584 [exp] 158 / 1e-43 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10029393 [exp] 156 / 6e-43 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10016166 [exp] 156 / 8e-43 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10000800 [exp] 138 / 4e-36 AT3G11840 293 / 7e-95 plant U-box 24 (.1) Lus10008368 [exp] 134 / 2e-34 AT3G11840 284 / 2e-91 plant U-box 24 (.1) Lus10005810 [exp] 120 / 8e-30 AT5G64660 400 / 7e-138 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.012G042600.1 pacid=42783999 polypeptide=Potri.012G042600.1.p locus=Potri.012G042600 ID=Potri.012G042600.1.v4.1 annot-version=v4.1 ATGGTTTTTAGTTGGAGAAGGAAGAAAGCTGCTCGAGAAAAGCTCTTTAAAGTCCAGGAGTTGGTGATTCCAAACCAGTTTCTTTGCCCAATATCTCTTG ATCTTATGAAGGATCCCGTCACATTATCTTCTGGGATAACATATGATCGGGAGAGCATAGAAACGTGGCTCGAGGGTGGGAATTTTACGTGCCCGGTAAC GAATCAAGTGCTAAGGAGTTTTGATCAGATTCCTAATCACAGTCTTAGGAAAATGATTCAAGATTGGGGTGTGGCGAATCGTAACTATGGCGTCGACCGA ATCCCAACACCTCGAGTTCCGGTTTTGGGAGCTCAGGTCTCGGAGGTTCTTTTTAGTTTGGAGGACTCGACAAAGCGTTTGAATGGGGCAGGGTGCCTAG AACTGGTGCAGAAAATCAAGAAATGGGGCAATGAAAGCGAGCGTAACAGGCGTTGTATCGTGGCGAATGGAGCACTTAGTGTGTTTGCAGCTGCGTTTGA TTCATTTGCGAGAGATTCTTTTGAAAGAAATGCTAATGTGTTGGAGGAGATATTATCTGCCATGAATTGGATGTTTCCTATATTCCAACATTCACTTGAT GCAGAAGTACGAGCGCATTTAGGCTCGCAAGATTCTTTACGCTGCTTGGTGTGGTTCTTGAAAAGCGGAGATCTTTCGGTGAAGCAAGACTCCATGATTG CATTAAGAGAAATTGTTTCTTTAGACCAAAAACAGGTAGAAGCATTGGCAGCCATTGAAGAGGTGTATGAAGTTCTTTTTAGGTTCATTAAGGACCCAGT TTGCCCTGCAATCACCAAAGCTTCTCTTATGGTAATATTCTATCTAGTATCATCTCCTTCTTCCACTAGCATAAAGACCAGATCAGCATTAGTGGAGATG GGCCTGGTTTCTTTGTTACTAGAAGTTACCATAGACTCAGAAAGGAGCACAAGTGAGAGAGCATTAGGTGTTTTTGATAGACTTTGTGATTGTGAAGAAG GAAGAGAAGAGGCCTACAGGAATGCTCTAACATGTCCAGTCTTGGTGAAGAAAATCTTGAGGGTATCAGAATTGGCAACGCAGTCTTCAGTTTCTGCCAT TTGGAAGCTTAGCAAGTATGGAAAGAAACATGAAGAGAACGTCCTGGTTGAGGCTCTTCAAGTAGGTTTATTTCAGAAGCTAGTGTTGCTCTTACAGCTT GGTTGTGGAGATGAGACAAAGGAGAAGACAACAGAACTTCTGAAACTGATGAGTCCTTACAGAGATGGATTGGAATGCATTGACTCAGTAGATTTCAAAA ATCTAAAACGGTCATTTTGA
AA sequence Show only first row Show all	>Potri.012G042600.1 pacid=42783999 polypeptide=Potri.012G042600.1.p locus=Potri.012G042600 ID=Potri.012G042600.1.v4.1 annot-version=v4.1 MVFSWRRKKAAREKLFKVQELVIPNQFLCPISLDLMKDPVTLSSGITYDRESIETWLEGGNFTCPVTNQVLRSFDQIPNHSLRKMIQDWGVANRNYGVDR IPTPRVPVLGAQVSEVLFSLEDSTKRLNGAGCLELVQKIKKWGNESERNRRCIVANGALSVFAAAFDSFARDSFERNANVLEEILSAMNWMFPIFQHSLD AEVRAHLGSQDSLRCLVWFLKSGDLSVKQDSMIALREIVSLDQKQVEALAAIEEVYEVLFRFIKDPVCPAITKASLMVIFYLVSSPSSTSIKTRSALVEM GLVSLLLEVTIDSERSTSERALGVFDRLCDCEEGREEAYRNALTCPVLVKKILRVSELATQSSVSAIWKLSKYGKKHEENVLVEALQVGLFQKLVLLLQL GCGDETKEKTTELLKLMSPYRDGLECIDSVDFKNLKRSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37490			ARM repeat superfamily protein...		Potri.012G042600 [exp]	0	1
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Potri.012G142000 [exp]	3.46	0.9785
AT2G26530		AR781	Protein of unknown function (D...		Potri.002G128500 [exp]	3.74	0.9786
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Potri.005G022000 [exp]	7.14	0.9787
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.011G037600 [exp]	11.95	0.9740
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045600 [exp]	12.32	0.9768
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.011G037300 [exp]	15.29	0.9706
AT5G42930			alpha/beta-Hydrolases superfam...		Potri.014G027500 [exp]	16.61	0.9752
AT4G23050			PAS domain-containing protein ...		Potri.001G108900 [exp]	18.13	0.9671
AT2G33500	CO	COL14	B-box type zinc finger protein...		Potri.001G323500 [exp]	18.43	0.9574
AT5G42930			alpha/beta-Hydrolases superfam...		Potri.014G027400 [exp]	18.97	0.9749

Compare expression of checked genes

Potri.012G042600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.