Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48440 172 / 2e-56 B-cell receptor-associated 31-like (.1) AT3G17780 169 / 1e-55 unknown protein AT5G17190 98 / 3e-27 unknown protein AT3G03160 92 / 5e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G030801 [exp] 216 / 7e-74 AT1G48440 184 / 4e-61 B-cell receptor-associated 31-like (.1) Potri.008G133600 [exp] 93 / 2e-25 AT5G17190 244 / 7e-85 unknown protein Potri.010G108000 [exp] 93 / 3e-25 AT5G17190 245 / 1e-85 unknown protein Potri.015G035400 [exp] 65 / 3e-14 AT3G03160 142 / 1e-44 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040126 [exp] 186 / 3e-62 AT1G48440 191 / 3e-64 B-cell receptor-associated 31-like (.1) Lus10001080 [exp] 185 / 9e-62 AT1G48440 190 / 7e-64 B-cell receptor-associated 31-like (.1) Lus10005110 [exp] 92 / 8e-25 AT5G17190 244 / 6e-85 unknown protein Lus10034347 [exp] 92 / 1e-24 AT5G17190 246 / 5e-86 unknown protein Lus10031957 [exp] 61 / 8e-13 AT5G17190 159 / 3e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G042700.2 pacid=42783219 polypeptide=Potri.012G042700.2.p locus=Potri.012G042700 ID=Potri.012G042700.2.v4.1 annot-version=v4.1 ATGGCGTTGCAATGGATGATACTGACATACCTAGTGGCAGCAGAGGCAGTAATAGCGGTACTCTTAACACTACCGTCGCCAAAGCTATTGAAGTACCGAT TGGTTTCTCTCATCTCTCTCGTTCTCCAGCCGGCTCTCTTTGTTGTCCCTTTTGCCGGATTCCAGCTCCTGGATATATATTGGAAAATGGAGCATCGATT GATGTGCACTGGTGAGACCTGCACCGCTGCTGAAAGAGATCGTTATGAGAAATCTATCTACAAAGCTCAAAGGAATGTCATTCTTTGCATTTCAGCATGC CTTCTCTACTGGTGTGTTTATCGTGTATGCAAATTTTACAAGGAGATTCAGAGCTTGGAGGAAGTAGAGAAGAGGTACAAGGACCAGTAG
AA sequence Show only first row Show all	>Potri.012G042700.2 pacid=42783219 polypeptide=Potri.012G042700.2.p locus=Potri.012G042700 ID=Potri.012G042700.2.v4.1 annot-version=v4.1 MALQWMILTYLVAAEAVIAVLLTLPSPKLLKYRLVSLISLVLQPALFVVPFAGFQLLDIYWKMEHRLMCTGETCTAAERDRYEKSIYKAQRNVILCISAC LLYWCVYRVCKFYKEIQSLEEVEKRYKDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48440			B-cell receptor-associated 31-...		Potri.012G042700 [exp]	0	1
AT1G05205			unknown protein		Potri.018G093501 [exp]	5.47	0.7689
AT1G23750			Nucleic acid-binding, OB-fold-...		Potri.008G189900 [exp]	6.32	0.8013
AT2G25950			Protein of unknown function (D...		Potri.018G056100 [exp]	7.07	0.7181
AT5G23540			Mov34/MPN/PAD-1 family protein...		Potri.014G032900 [exp]	7.21	0.8365
AT3G03070			NADH-ubiquinone oxidoreductase...		Potri.013G082100 [exp]	10.19	0.8110
AT3G12587			Oligosaccaryltransferase (.1)		Potri.008G053300 [exp]	10.81	0.7706
AT4G17085			Putative membrane lipoprotein ...		Potri.003G085400 [exp]	10.95	0.7333
AT1G05720			selenoprotein family protein (...		Potri.013G126900 [exp]	12.00	0.8030
AT5G20165			unknown protein		Potri.008G176801 [exp]	12.68	0.7880
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Potri.008G103400 [exp]	20.39	0.7324

Compare expression of checked genes

Potri.012G042700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.