Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05260 337 / 2e-115 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G11290 332 / 2e-113 Peroxidase superfamily protein (.1) AT3G01190 327 / 6e-112 Peroxidase superfamily protein (.1) AT2G39040 321 / 5e-109 Peroxidase superfamily protein (.1) AT5G15180 320 / 8e-109 Peroxidase superfamily protein (.1) AT3G21770 317 / 1e-107 Peroxidase superfamily protein (.1) AT1G05250 310 / 5e-105 Peroxidase superfamily protein (.1) AT1G05240 310 / 5e-105 Peroxidase superfamily protein (.1) AT5G64120 275 / 2e-91 Peroxidase superfamily protein (.1) AT5G51890 256 / 5e-84 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G122451 [exp] 341 / 2e-117 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 340 / 5e-117 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 340 / 5e-117 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 340 / 5e-117 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 340 / 5e-117 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 340 / 7e-117 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122100 [exp] 336 / 2e-115 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 334 / 2e-114 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 330 / 5e-113 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027163 [exp] 332 / 1e-113 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10031548 [exp] 332 / 2e-113 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039681 [exp] 331 / 5e-113 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10027164 [exp] 330 / 8e-113 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015127 [exp] 330 / 8e-113 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10021956 [exp] 332 / 5e-112 AT2G39040 323 / 6e-108 Peroxidase superfamily protein (.1) Lus10039680 [exp] 325 / 9e-111 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10018374 [exp] 322 / 1e-109 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10007638 [exp] 317 / 8e-108 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10041250 [exp] 315 / 1e-106 AT2G39040 310 / 3e-104 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.012G042800.1 pacid=42782565 polypeptide=Potri.012G042800.1.p locus=Potri.012G042800 ID=Potri.012G042800.1.v4.1 annot-version=v4.1 ATGAAGACTGCTTTTATTTTTGCTTGTGTAGCAGTCTTGACAGTTGTTGGGGTTTGTCAGGCTGGTGATTTGAGGAAGGACTTCTACAGGACCTCTTGCC CTGCAGCTGAGAGCATCGTCAAAAATATCACTGAAACACGTGCTGCAAGCAACCCCAACTTACCTGCAAAGTTATTGAGAATGCATTTTCATGACTGCTT CGTAAGGGGTTGCGATGCCTCCATTTTAATAAACTCAGCAAATAGCACAGCGGAGAAAGATGCAATTCCAAATCTATCTTTGGCAAACTTCGATGTTATT GATGAGATTAAAACGGAGCTAGAGAACAAATGTGCAGGAAAAGTATCCTGTGCTGACATTTTGGCTTTGGCTGCCAGGGATGCGGTCTCATTCCAGTTCA AAAAACCAATGTGGGAAGTGCTTACTGGTAGAAGAGATGGTAATGTGTCAGTAGCTTCGGAGGTCCTGACAAACATTCCTTCCCCATTCTTAAACTTTTC CAGCCTCGTTCAAAGTTTCAAGAGCAAGGGTCTAACTGTTCATGATCTCGTTGTACTATCAGGGGCACATACCATTGGTGTTGGCCACTGCAACCTGTTC AGCAATCGACTCTACAACTTCACAGGAAAAGCAGACCAGGATCCTTCTTTGAACTCAACATACGCTGCTTTCTTAAAGACCAAATGCCAAAGTCTTAGCG ACAGAACCACCACAGTAGAGATGGACCCTGGCAGCTCTCAGAATTTCGATGCTTCCTACTTTGTTATCCTTAAACAGCAAAAGGGTCTCTTCCAATCTGA CGCAGCCCTTCTAACAGACAAAACTTCGAGTAATATTGTTGGAGAGCTGGTTAAATCAACTGATTTTTTCAAAGAATTCTCCCAGTCAATGAAAAGAATG GGAGCAATTGGGGTTCTTACGGGCAACTCAGGGGAGATCAGAAAGACGTGCGGCGTTATCAATTCCTGA
AA sequence Show only first row Show all	>Potri.012G042800.1 pacid=42782565 polypeptide=Potri.012G042800.1.p locus=Potri.012G042800 ID=Potri.012G042800.1.v4.1 annot-version=v4.1 MKTAFIFACVAVLTVVGVCQAGDLRKDFYRTSCPAAESIVKNITETRAASNPNLPAKLLRMHFHDCFVRGCDASILINSANSTAEKDAIPNLSLANFDVI DEIKTELENKCAGKVSCADILALAARDAVSFQFKKPMWEVLTGRRDGNVSVASEVLTNIPSPFLNFSSLVQSFKSKGLTVHDLVVLSGAHTIGVGHCNLF SNRLYNFTGKADQDPSLNSTYAAFLKTKCQSLSDRTTTVEMDPGSSQNFDASYFVILKQQKGLFQSDAALLTDKTSSNIVGELVKSTDFFKEFSQSMKRM GAIGVLTGNSGEIRKTCGVINS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.012G042800 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.004G033000 [exp]	1.00	0.9952
AT2G01900			DNAse I-like superfamily prote...		Potri.008G139600 [exp]	2.00	0.9894
AT3G01190			Peroxidase superfamily protein...		Potri.004G023100 [exp]	2.64	0.9826
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.003G122500 [exp]	2.82	0.9876	CYP87.2
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176200 [exp]	3.00	0.9880	AOP1.1
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.012G137300 [exp]	3.16	0.9867
AT1G66120			AMP-dependent synthetase and l...		Potri.016G034800 [exp]	4.24	0.9849
AT1G64160			Disease resistance-responsive ...		Potri.003G134400 [exp]	5.19	0.9771	Pt-DRR206.5
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Potri.015G025900 [exp]	6.63	0.9524
AT5G37990			S-adenosyl-L-methionine-depend...		Potri.017G121800 [exp]	7.48	0.9776

Compare expression of checked genes

Potri.012G042800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.