Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SKOR.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02850 1031 / 0 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 998 / 0 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT2G26650 401 / 5e-127 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT4G32500 363 / 1e-112 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT2G25600 359 / 7e-111 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G22200 354 / 1e-109 AKT3, AKT2/3 potassium transport 2/3 (.1) AT5G46240 299 / 3e-90 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G18290 294 / 3e-88 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT4G32650 269 / 8e-80 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT2G03430 69 / 7e-13 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G135400 [exp] 1081 / 0 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.004G083300 [exp] 1068 / 0 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.018G071400 [exp] 399 / 4e-126 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.006G249900 [exp] 380 / 9e-119 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G031600 [exp] 380 / 1e-118 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.003G018800 [exp] 358 / 7e-111 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.004G132200 [exp] 306 / 2e-92 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.006G245000 [exp] 279 / 2e-83 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G035500 [exp] 266 / 1e-78 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001999 [exp] 1116 / 0 AT3G02850 970 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10015687 [exp] 1035 / 0 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10037694 [exp] 526 / 3e-171 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10033052 [exp] 392 / 4e-123 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019944 [exp] 385 / 3e-121 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10043298 [exp] 384 / 3e-120 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019442 [exp] 384 / 5e-120 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10015474 [exp] 366 / 1e-113 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1) Lus10002529 [exp] 365 / 5e-113 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10008082 [exp] 353 / 3e-109 AT2G25600 994 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein CL0030 [poplar] [flax] PF11834 [poplar] [flax] KHA KHA, dimerisation domain of potassium ion channel CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.012G043000.8 pacid=42784116 polypeptide=Potri.012G043000.8.p locus=Potri.012G043000 ID=Potri.012G043000.8.v4.1 annot-version=v4.1 ATGATGATGATGATACAGGGAAGAGAAAGGACAAGAGGTGGTGTTGGTAATGGAGGTGATGGATCAGATGAGGAAGAAGAATTGGAGGTTGAGAAACTTA GAGGGGAGAGTAAACCATCATGGAAGAGGCTATTTGGGCTGCTCAGAATGGAGTCTTCGACTCGAGATGGAATCGTTTTTAGAGATGGAAGCAGCTTAGG GCAGTCTTCCGTTTCTGATGCTTATATTATCCGTCCTGACAGCTGCAGGAGGTACACAGTATGGGTGCACTTCATACTGATATGGGCAGTCTACTCTTCC TTCTTTACACCACTGGAGTTTGGTTTCTTCAGAGGACTCCCAGAGAACCTTTTCTTGCTAGACATTGCTGGTCAGATTGCTTTCTTGATAGACATTGTGG TCCATTTCTTTGTGGCCTATCGTGCAACTCACTCTTATCGCCTGGTCTCCAGTCACAAGCTCATTGCCATTAGGTACTTGAAATCTCGGTTCTTGGTTGA TTTTCTTGGCTGTCTGCCTTGGGATGCCATCTTCAAGGTTTCTGGGAGAAAGGAGGCAGTGAGATATATGTTGTGGATTAGGCTAAGTCGGGCCAAAAGA GTGTCAGAATTTTTTGAGAGGTTGGAGAAAGATATCAGGATCAATTACCTTTTTACAAGAATTGTGAAACTTCTTGTTGTTGAACTCTATTGTACACATA CAGCAGCCTGCATTTTTTACTATCTTGCTACTACTATGCCTCCCTCCCAGGAAGGTTACACATGGATAGGAAGCTTACAGATGGGTGACTATCGCTATAC ACACTTCAGGGAGATTGATCTTTGGAAGCGATACATAACATCACTTTACTTTGCCATTGTTACTATGGCAACTGTCGGTTATGGAGAGATACATGCAGTA AATGTCAGAGAAATGATATTTGTCATGGTTTATGTATCTTTTGACATGATTCTTGGTGCTTATCTGCTTGGTAACATGACTGCATTAATTGTAAAAGGAT CAAAGACAGAAAAGTTTAGGGATAGAATGACTGACCTTATCAAATACATGAATAGAAATAATCTTGGGAAAGGCATGAGCAATGAGATCAAACGCCATCT GAGATTACAATACGATCGCAGCTACACAGAAACATCTGTTCTGCAGGAAATCCCAGCTTCTATTCGGACAAAGATCTCACAGAAATTATATGAACCATAT ATTAAAGAAGTTTCTCTTTTCAAGGGTTGCTCTTTGGAATTCATTAAGCAGATAGCAATTCGAGTTCATGAAGAGTATTTCCTTCCTGGAGAAGTGATTA TAGAGCAGGGACATGTAGCAGATCAACTTTATGTTGTCTGCCACGGTGAACTGGAGGAATTCGGAAGAGGTGAAAATGATCGAGCAGAAGAGTTTATCAA GCGTCTGCAAACCTATAGCTCATTTGGGGAAGTTTCTTTTCTTTGCAACACTCCTCAGCCTTATACAATACGAGTTCGCGAACTATGCAGGGTATTACGA CTTGATAAGCAATCTTTTACAGAGATCCTTGATATATACTTCTCTGATGGGCGAATTATCTTGAACAATCTCCTTGAGGGAAAAGATGCCAATCTACGGA ATGAATTATTGGAGTCAGATGTTACCCTTTACATTGAAAAGTCTGAATCGGAGCTCGCTATGAGGTTGAATTGTGCTGCTTTTGATGGGGATTATTATCG ACTGAAACGGTTGATTGAAGTTGGAGCAGATCCTAACAAGGCTGATTATGACAGAAGATCACCTCTGCATGTTGCTGCTTCTAAAGGAGATGGAGATATA TCTCAACTGCTTATCGAACATGGAGTGGACGTCAACATTTCAGATAAATTTGGGAACACACCATTGCTAGAAGCCGTCAAGGGTGGGCATGATGAAGTAG CTTCCTTACTTGTTAAAGCAGGGGCATCACTGGCAATTGATGATGCTGGTGGTTTTCTCTGTACAACTGTTGTAAAGAGGGATTTGAATCTCTTGAAAAG GGTTCTGGCCAATGGAATCAATCCAAATGCAAAAAACTTTGATTATCGAACACCTTTGCACATTGCTGCCTCGGAAGACTTGCACTCAATCGCAAGTTTA CTTATAGAAGCAGGGGCCAGCGTTTTTCCAAAGGACAGATGGGGAAACACTCCACTTGATGAAGCTCGTATTGGTGGAAATAAGGATTTGATTAAATTGC TTGAGGTTGCAAGAGCTTCTCAAATAGTAACAGATGATATGCAAAGAATGAAATGCACAGTGTTTCCATTCCATCCATGGGACCCAAAAGAGAAGAGAAG AGAGGGAGTCGTCCTGTGGGTTCCTCAAACCATTGAAGAACTTGTCAAGGCAGCTATGGAGCAATTAAAATCTTCAGGTGGTTACCTTTTATCTGAAAAC GGTGGCAAAATTCTTGATGTGAACATGATCAGTCATGACCAGAAGCTATTTTTAGTCTATGAGTGA
AA sequence Show only first row Show all	>Potri.012G043000.8 pacid=42784116 polypeptide=Potri.012G043000.8.p locus=Potri.012G043000 ID=Potri.012G043000.8.v4.1 annot-version=v4.1 MMMMIQGRERTRGGVGNGGDGSDEEEELEVEKLRGESKPSWKRLFGLLRMESSTRDGIVFRDGSSLGQSSVSDAYIIRPDSCRRYTVWVHFILIWAVYSS FFTPLEFGFFRGLPENLFLLDIAGQIAFLIDIVVHFFVAYRATHSYRLVSSHKLIAIRYLKSRFLVDFLGCLPWDAIFKVSGRKEAVRYMLWIRLSRAKR VSEFFERLEKDIRINYLFTRIVKLLVVELYCTHTAACIFYYLATTMPPSQEGYTWIGSLQMGDYRYTHFREIDLWKRYITSLYFAIVTMATVGYGEIHAV NVREMIFVMVYVSFDMILGAYLLGNMTALIVKGSKTEKFRDRMTDLIKYMNRNNLGKGMSNEIKRHLRLQYDRSYTETSVLQEIPASIRTKISQKLYEPY IKEVSLFKGCSLEFIKQIAIRVHEEYFLPGEVIIEQGHVADQLYVVCHGELEEFGRGENDRAEEFIKRLQTYSSFGEVSFLCNTPQPYTIRVRELCRVLR LDKQSFTEILDIYFSDGRIILNNLLEGKDANLRNELLESDVTLYIEKSESELAMRLNCAAFDGDYYRLKRLIEVGADPNKADYDRRSPLHVAASKGDGDI SQLLIEHGVDVNISDKFGNTPLLEAVKGGHDEVASLLVKAGASLAIDDAGGFLCTTVVKRDLNLLKRVLANGINPNAKNFDYRTPLHIAASEDLHSIASL LIEAGASVFPKDRWGNTPLDEARIGGNKDLIKLLEVARASQIVTDDMQRMKCTVFPFHPWDPKEKRREGVVLWVPQTIEELVKAAMEQLKSSGGYLLSEN GGKILDVNMISHDQKLFLVYE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Potri.012G043000 [exp]	0	1	Pt-SKOR.2
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Potri.014G132400 [exp]	2.00	0.8219
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Potri.014G159400 [exp]	2.82	0.8182	AGO902
AT4G16447			unknown protein		Potri.014G165000 [exp]	3.74	0.7841
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.001G183800 [exp]	10.95	0.7880
AT3G06540		AthREP	Rab escort protein (.1)		Potri.005G028900 [exp]	15.16	0.7009
AT1G11440			unknown protein		Potri.004G029500 [exp]	19.74	0.7213
AT1G18610			Galactose oxidase/kelch repeat...		Potri.005G013000 [exp]	23.32	0.7171
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Potri.013G021700 [exp]	23.74	0.6518
AT5G05800			unknown protein		Potri.005G153700 [exp]	24.18	0.7761
AT1G63350			Disease resistance protein (CC...		Potri.018G145534 [exp]	25.39	0.7052

Compare expression of checked genes

Potri.012G043000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.