Plant FIBer expression Database

Potri.012G043300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G17810 468 / 9e-167 PYD1 pyrimidine 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G030600
[exp]
521 / 0 AT3G17810 709 / 0.0 pyrimidine 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017995
[exp]
489 / 4e-175 AT3G17810 686 / 0.0 pyrimidine 1 (.1)
Lus10041990
[exp]
488 / 1e-174 AT3G17810 686 / 0.0 pyrimidine 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF01180 DHO_dh Dihydroorotate dehydrogenase
Representative CDS sequence
>Potri.012G043300.3 pacid=42784107 polypeptide=Potri.012G043300.3.p locus=Potri.012G043300 ID=Potri.012G043300.3.v4.1 annot-version=v4.1
ATGGAGGAGTATGACAAAGCTGCTTGGGAGGAACTCATTGACCGAGTAGAGCAAACTGGAATTGATGCCTTAGAAATCAATTTCTCATGTCCTCATGGAA
TGCCTGAGCGTAAAATGGGTGCTGCAGTTGGCCAAGATTGTGCGCTATTGGAAGAGGTTCGTGGATGGATTAATGCAAAAGCTACAGTCCCAGTATGGGC
AAAGATGACTCCTAACATCACTGACATAAAACAGCCAGCTAGGGTGGCATTACTATCCTTATGCGAGGGAGTGTCTGCTATTAATACCATCATGAGTGTT
ATGGGAATAAATCTGAAAACCTTACGGCCAGAGCCTTGTGTTGAAGGATATTCAACTCCTGGGGGTTACTCTTCCAAATCAGTCCATCCTATTGCACTAG
AGAAAGTAATGAGTATTGCTAAAATGATGAAATCAGAATTTGATTTGGACCAACACTCACTTTCTGGTATTGGAGTTGTTGAGACCGGTGGTGATGCTGC
CGAGTTTATTCTTCTCGGAGCAAATACAGTTCAGGTCTGCACTGGGGTTATGATGCATGGATATGGCCTTGTGAAGAAACTCTGTGAAGAGCTGAAGGAT
TTCATGAAAATGCACAACTTCTCATCAATAGAAGATTTCAGAGGAGCATCTCTTGAGTATTTCACAACGCACATGGATTTGGTGCGCCGGCAACAAGAAG
CCATGCAACAGAGGAAAGCTATCAAGACAGGTTTGCAGTCTGACAAGGATTGGACTGGAGATGGTTTTGTTAAGGAGTCGGAGAGCATGGTTTCCAACTA
A
AA sequence
>Potri.012G043300.3 pacid=42784107 polypeptide=Potri.012G043300.3.p locus=Potri.012G043300 ID=Potri.012G043300.3.v4.1 annot-version=v4.1
MEEYDKAAWEELIDRVEQTGIDALEINFSCPHGMPERKMGAAVGQDCALLEEVRGWINAKATVPVWAKMTPNITDIKQPARVALLSLCEGVSAINTIMSV
MGINLKTLRPEPCVEGYSTPGGYSSKSVHPIALEKVMSIAKMMKSEFDLDQHSLSGIGVVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKKLCEELKD
FMKMHNFSSIEDFRGASLEYFTTHMDLVRRQQEAMQQRKAIKTGLQSDKDWTGDGFVKESESMVSN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G17810 PYD1 pyrimidine 1 (.1) Potri.012G043300
[exp]
0 1
AT3G23780 NRPE2, DMS2, DR... DEFECTIVE IN MERISTEM SILENCIN... Potri.006G263900
[exp]
5.19 0.7403
AT1G73930 unknown protein Potri.015G049900
[exp]
6.00 0.7061
AT3G18270 CYP77A5P "cytochrome P450, family 77, s... Potri.015G044400
[exp]
22.44 0.6691
AT1G09230 RNA-binding (RRM/RBD/RNP motif... Potri.019G031700
[exp]
24.49 0.7121
AT4G18100 Ribosomal protein L32e (.1) Potri.011G078200
[exp]
33.76 0.7106 RPL32.1
AT1G78800 UDP-Glycosyltransferase superf... Potri.001G393000
[exp]
39.24 0.7044
Potri.018G035750
[exp]
43.56 0.6462
AT5G46630 Clathrin adaptor complexes med... Potri.001G143800
[exp]
45.49 0.6207
AT5G08110 nucleic acid binding;ATP-depen... Potri.012G063000
[exp]
48.98 0.6719
AT2G39550 GGB, ATGGT-IB, ... GERANYLGERANYLTRANSFERASE-I BE... Potri.010G206001
[exp]
61.11 0.6736

Potri.012G043300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.