Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10170 1379 / 0 ATNFXL1 NF-X-like 1 (.1) AT5G05660 266 / 3e-75 EBI, ATNFXL2 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G034500 [exp] 1779 / 0 AT1G10170 1363 / 0.0 NF-X-like 1 (.1) Potri.010G188700 [exp] 267 / 2e-75 AT5G05660 1038 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1) Potri.008G068500 [exp] 63 / 2e-10 AT5G05660 171 / 2e-48 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025071 [exp] 1501 / 0 AT1G10170 1365 / 0.0 NF-X-like 1 (.1) Lus10034470 [exp] 1476 / 0 AT1G10170 1345 / 0.0 NF-X-like 1 (.1) Lus10028286 [exp] 233 / 1e-63 AT5G05660 1131 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1) Lus10040200 [exp] 206 / 8e-55 AT5G05660 1064 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01422 [poplar] [flax] zf-NF-X1 NF-X1 type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.012G043700.1 pacid=42782910 polypeptide=Potri.012G043700.1.p locus=Potri.012G043700 ID=Potri.012G043700.1.v4.1 annot-version=v4.1 ATGGGTCGGGGGAAGGAGAGGGGGGTGGAGACTCGGGAAGTGAAGGACCCGAATTTGCCGCAACTTGCGCAAGAAATTCAGGAGAAGCTTTTGAAGAGTA CGGTTGAGTGTATGATTTGTTATGATATGGTTCGGAGGTCTGCGCCTGTTTGGTCTTGTTCGAGTTGTTTCTCGATTTTTCACTTGAATTGTATCAAGAA ATGGGCTCGTGCGCCGACGTCTGTTGATTTGATTGCGGAGAAGAATCAAGGTTTTAATTGGCGGTGTCCGGGATGTCAATCTGTGCAGCTTACGTCGTTG AAGGATATTCGGTATGTTTGCTTTTGTGGGAAGAGGACGGATCCGCCTTCGGATTTGTATTTGACCCCGCATTCATGTGGGGAACCGTGTGGAAAACAGC TTGAGAAGGAGGTTCCTGGTGCTGATGGGAGTAGGGAGGGTCTTTGTCCGCACAATTGTGTCTTGCAGTGTCACCCTGGGCCATGTCCTCCTTGTAAGGC CTTTGCTCCACCAAGTCTGTGTCCTTGTGGGAAGAAAAGAATCACAACAAGATGTGCTGATCGGAAGTCCGTTCTTACCTGTGGGCAACGATGTGATAAG CTTCTGGAATGTTGGCGTCATCGATGTGAGCAGATTTGCCATGTTGGTCCCTGCAATCCTTGTCAGGTATTGATTAATGCTTCATGTTTCTGCAAGAAGA ACACGGAGGTTGTTCTATGTGGGGATATGGCAGTGAAGGGAGAAGTGAAAGCTGAAGATGGTGTTTTTTCTTGCAACTCAACATGTGGAAAGGTTCTGGG TTGTGGAAATCATATTTGTGGTGAAACTTGTCATCCAGGTGATTGCGGGGATTGTGAGTTTATGCCTGGCAGGGTCAAGTCATGCTATTGTGGAAAAACA AGTTTGCAGGAGGAAAGAAATAGTTGTTTGGATCCAATTCCAACGTGTGCACAAATATGTGGCAAATCCCTTCCTTGCGGGATGCACCAATGTAAAGAGG TGTGCCATTCAGGGGATTGTGCTCCTTGTTTGGTTTCTGTCACCCAAAAATGCCGCTGCGGATCAACCTCCCGAACTGTGGAGTGTTACAAAACTACTTC AGAGAATGAAAAATTCCTGTGTGACAAGCCTTGTGGTCGAAAGAAGAACTGTGGAAGGCATAGGTGCAGCGAGCGATGCTGCCCTCTTTCCAACTCTAAC AATCAGTTCTCTGGGGATTGGGATCCACATTTTTGTCAAATGGCTTGTGGGAAGAAGTTAAGGTGTGGACAACACTCTTGTGAATCACTGTGTCACAGTG GCCATTGTCCTCCTTGTCTTGAAACAATTTTCACTGATTTGACATGTGCATGTGGGAGAACTTCCATCCCTCCTCCATTGCCGTGCGGCACGCCTCCCCC TTCATGTCAGCTCCCATGCTCAGTTCCTCAGCCATGTGGCCATCCAGCTTCTCATAGCTGCCACTTCGGAGACTGCCCACCTTGTTCGGTGCCTGTAGCT AAAGAGTGTGTTGGTGGGCATGTGATTCTGGGGAACATACCCTGCGGGTCAAGGGATATCAGATGCAACAAACTCTGTGGGAAGACCAGGCAATGTGGTT TGCATGCATGTGGAAGAACTTGTCATTCACCGCCTTGTGATACCTCTCCTGGAACTGAAACTGGCTCAAGAGCTTCTTGTGGGCAGACATGCGGTGCCCC TAGGAGAGATTGCCGGCATACTTGCACTGCACTTTGTCATCCTTATGCTCCTTGTCCTGATGTCAGATGTGAGTTCCCTGTCACAATTACTTGCTCTTGC GGCAGGATGACAGCATCTGTTCCTTGTGATGCTGGAGGGAGCAATGGTGGTTATAATGATACTATTTTAGAAGCATCCATTCTCCACAAGTTGCCAGCGC CTCTTCAACCAGTGGAATCATCTGGAAAGAAGATTCCTCTTGGCCAGAGAAAGTTTATGTGTGATGATGAATGTGCCAAGTTTGAGCGGAAAAGGGTTCT TGCAGATGCTTTTGATATCAACCCTCCAAATTTGGAAGCTCTTCATTTTGGTGAGAATTCTTCCGTGACAGAGTTGATTGGTGATCTGTACAGGCGCGAT CCAAAATGGGTGCTTGCTGTGGAGGAGAGGTGCAAATATTTGGTTCTTAGCAAGAGCAGAGGAACCACAAGTGGTCTTAAGATTCATGTTTTCTGCCCAA TGCTGAAGGATAAAAGAGATGCAGTTAGGCTAATTGCTGAGAGGTGGAAGGTTGCAATTTATTCTGCTGGTTGGGAGCCAAAGCGTTTTATTGTAATCCA TGCTACACCAAAATCCAAAACCCCATCTCGTGTGATTGGCATTAAGGGTACGACAACTTTAAGTGCCTCCCATCCACCAGTTTTTGATGCTCTCGTAGAC ATGGATCCCAGGCTTGTTGTTTCTTTTCTAGATTTGCCGAGGGAGGCGGATATAAGCTCACTGGTCCTTAGGTTTGGTGGGGAATGCGAACTAGTTTGGT TGAATGATAAGAATGCCCTGGCTGTATTCAATGATCCTGCTCGAGCAGCAACCGCTATGAGGAGGTTGGATCATGGATCAGTATATTATGGAGCTGCGGT GGTTCCTCAAAATAGCGGTGCATCCATGGGATCACCAGCTACCAATGCCTGGGGAACGGCAGGCACTGCAAAGGAAGGGACGATCACAGCTCTGAAGGGA ACTTCGTGGAAGAAAGCTGTAGTGCAGGAGTCTGGTTGGAGGGAAGATTCATGGGGTGATGAAGAGTGGTCTGGTGGTGGTTCTGCAGATGTTCAGGCTT CTGCATGGAAAGGGAAAGAACATCCAATCTCCACTTCAATTAACCGATGGAGTGTACTGGACTCCGATAAGGCTGACAGTTCATCTGCTGCCTCTGTCAG GATCGAGGATCCTGCAAAACGAGTTGCAGAAATTCTTTCCAGTTCAGGTTTGGAATCAAATGTAAGCACTTCGAATATATCAGTGCAAACTGCGATGCAA CCTGGAGGGGTTTCAAGTGAAGAAGATTTATCTGAGGTGGTGGATGACTGGGAGAAGGCCTATGATTGA
AA sequence Show only first row Show all	>Potri.012G043700.1 pacid=42782910 polypeptide=Potri.012G043700.1.p locus=Potri.012G043700 ID=Potri.012G043700.1.v4.1 annot-version=v4.1 MGRGKERGVETREVKDPNLPQLAQEIQEKLLKSTVECMICYDMVRRSAPVWSCSSCFSIFHLNCIKKWARAPTSVDLIAEKNQGFNWRCPGCQSVQLTSL KDIRYVCFCGKRTDPPSDLYLTPHSCGEPCGKQLEKEVPGADGSREGLCPHNCVLQCHPGPCPPCKAFAPPSLCPCGKKRITTRCADRKSVLTCGQRCDK LLECWRHRCEQICHVGPCNPCQVLINASCFCKKNTEVVLCGDMAVKGEVKAEDGVFSCNSTCGKVLGCGNHICGETCHPGDCGDCEFMPGRVKSCYCGKT SLQEERNSCLDPIPTCAQICGKSLPCGMHQCKEVCHSGDCAPCLVSVTQKCRCGSTSRTVECYKTTSENEKFLCDKPCGRKKNCGRHRCSERCCPLSNSN NQFSGDWDPHFCQMACGKKLRCGQHSCESLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHPASHSCHFGDCPPCSVPVA KECVGGHVILGNIPCGSRDIRCNKLCGKTRQCGLHACGRTCHSPPCDTSPGTETGSRASCGQTCGAPRRDCRHTCTALCHPYAPCPDVRCEFPVTITCSC GRMTASVPCDAGGSNGGYNDTILEASILHKLPAPLQPVESSGKKIPLGQRKFMCDDECAKFERKRVLADAFDINPPNLEALHFGENSSVTELIGDLYRRD PKWVLAVEERCKYLVLSKSRGTTSGLKIHVFCPMLKDKRDAVRLIAERWKVAIYSAGWEPKRFIVIHATPKSKTPSRVIGIKGTTTLSASHPPVFDALVD MDPRLVVSFLDLPREADISSLVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLDHGSVYYGAAVVPQNSGASMGSPATNAWGTAGTAKEGTITALKG TSWKKAVVQESGWREDSWGDEEWSGGGSADVQASAWKGKEHPISTSINRWSVLDSDKADSSSAASVRIEDPAKRVAEILSSSGLESNVSTSNISVQTAMQ PGGVSSEEDLSEVVDDWEKAYD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Potri.012G043700 [exp]	0	1
AT5G28460			Pentatricopeptide repeat (PPR)...		Potri.014G090400 [exp]	1.00	0.9469
AT3G24000			Tetratricopeptide repeat (TPR)...		Potri.006G001200 [exp]	9.79	0.9183
					Potri.003G088350 [exp]	12.00	0.9177
AT2G04620			Cation efflux family protein (...		Potri.005G110300 [exp]	14.14	0.9024	PtrMTP12
AT4G24160			alpha/beta-Hydrolases superfam...		Potri.005G235200 [exp]	16.61	0.9297
AT1G04840			Tetratricopeptide repeat (TPR)...		Potri.001G316500 [exp]	17.23	0.9194
AT1G24620			EF hand calcium-binding protei...		Potri.008G134300 [exp]	17.60	0.8702
AT1G15060			Uncharacterised conserved prot...		Potri.008G124400 [exp]	17.66	0.8702
AT4G22740			glycine-rich protein (.1.2)		Potri.001G117400 [exp]	18.08	0.8984
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Potri.018G069200 [exp]	19.36	0.9334

Compare expression of checked genes

Potri.012G043700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.