Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATLCB1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36480 739 / 0 FBR11, EMB2779, ATLCB1 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) AT3G48780 136 / 7e-35 ATSPT1 serine palmitoyltransferase 1 (.1) AT5G23670 131 / 4e-33 ATLCB2, LCB2 long chain base2 (.1.2) AT3G48790 110 / 1e-26 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G04620 74 / 1e-13 BIO4, ATBIOF biotin 4, biotin F (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G034600 [exp] 850 / 0 AT4G36480 728 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Potri.012G104500 [exp] 135 / 2e-34 AT5G23670 855 / 0.0 long chain base2 (.1.2) Potri.015G103800 [exp] 134 / 4e-34 AT5G23670 829 / 0.0 long chain base2 (.1.2) Potri.001G126700 [exp] 61 / 1e-09 AT5G04620 607 / 0.0 biotin 4, biotin F (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013317 [exp] 758 / 0 AT4G36480 774 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Lus10005205 [exp] 735 / 0 AT4G36480 772 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Lus10036011 [exp] 134 / 1e-33 AT5G23670 877 / 0.0 long chain base2 (.1.2) Lus10016717 [exp] 130 / 1e-32 AT5G23670 885 / 0.0 long chain base2 (.1.2) Lus10009024 [exp] 64 / 9e-11 AT5G04620 667 / 0.0 biotin 4, biotin F (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.012G043800.3 pacid=42783135 polypeptide=Potri.012G043800.3.p locus=Potri.012G043800 ID=Potri.012G043800.3.v4.1 annot-version=v4.1 ATGGATACCATGGCTTCAAATGTTTTGCAATTACTGGATAGCACTTTGGAGAGGGTGACATCGGCTTTGGATTTTCCATCTGCGAGAGCTGTTGTTTTTG GTGTTCATATTGGAGGGCATCTTTTTGTGGAGGTTCTTCTTTTAGTGGTCATTCTTTTTCTTCTTTCCCAGAAAAGTTATAAGCATCCTAAGCGGCCCTT AACAAAGAAGGAAATAGACGAGCTATGTGATGAATGGGTTCCAGAATCCCTTATTCCTCCTATTACAGATGAGATGCGATATGAGCCACCAGTATTGGAA AGTGCTGCTGGGCCACATACCATAATCAATGGCAAAGATGTTGTAAACTTTGCCTCAGCTAATTATCTTGGTCTAACAGGGCACGAGAAACAAATTGATT CAAGTACCTCGGCCATGGAAAAATATGGTGTTGGTTCCTGTGGTCCTCGTGGGTTCTATGGAACAATTGATGTCCACCTTGATTGTGAGGCCAGAATAGC CAAGTTTCTGGGAACTCCTGATTCAATTATCTATTCATACGGACTTTCCACTATGTTCAGTACAATTCCATGTTTTTGCAAAAAAGGAGACATAATTGTT GTGGATGAGGGAGTCCATTGGGGAATACAGAACGGCCTGTATCTTTCCAGAAGCACCATTGTGTATTTCAAGCACAATGACATGGAATCTCTACGAAATG CTTTGGAGAAAATTACAGTAGAGAACAAGCGGGCCAAGGAGTTGCGACGCTATATTGTAGTTGAAGCTGTGTACCAGAACTCTGGCCAAATAGCCCCTTT AAATGAGATCATCAGATTGAAGGAGAAATATCTCTTCCGTGTTTTGTTGGATGAGAGCAACTCATTTGGTGTGCTTGGCAGGTCTGGGAGAGGTCTTACT GAATACCATGGGGTGCCGATTGAGAAGATAGATATTGTTACTGCAGATATGGGCCATGCATTAGCCACTGAAGGAGGATTCTGCACTGGAAGTTCCAGAG TCGTCGATCATCAACGACTTAGCAGTTCTGGATATGTGTTTTCTGCTTCTCTTCCACCATATCTTGCAAGCGCTGCAATTACCGCTATCGATGTTCTGGA GGATAATCCTGCTTTAATAGAAAAATTGAAAGAAAACATTGCCATCTTGTGGAAAGGATTGTCCAACATACAGGGTCTCTCTATAAGCAGCAATCCTAAA TCGCCTATTGTTTTTCTCAACCTAGAGAAGTCCACAGGTTCCACTAAAGATGACCTTAAACTCCTTGAAGCTATGGCTGATCGGGCATTGAAGGAAGACT CTGTATTTGTTGTAACCACAAAGAGATCAACACTTGATAAATGTCGTTTGCCTGTGGGAATCAGATTGTTTGTATCTGCCGCTCATTCAGATTCTGATCT GCTCAAGGCATGTGAATCCTTGAAGAGGGTTGCAGCATTGGTGCTGATGAATCAATGA
AA sequence Show only first row Show all	>Potri.012G043800.3 pacid=42783135 polypeptide=Potri.012G043800.3.p locus=Potri.012G043800 ID=Potri.012G043800.3.v4.1 annot-version=v4.1 MDTMASNVLQLLDSTLERVTSALDFPSARAVVFGVHIGGHLFVEVLLLVVILFLLSQKSYKHPKRPLTKKEIDELCDEWVPESLIPPITDEMRYEPPVLE SAAGPHTIINGKDVVNFASANYLGLTGHEKQIDSSTSAMEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSIIYSYGLSTMFSTIPCFCKKGDIIV VDEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNALEKITVENKRAKELRRYIVVEAVYQNSGQIAPLNEIIRLKEKYLFRVLLDESNSFGVLGRSGRGLT EYHGVPIEKIDIVTADMGHALATEGGFCTGSSRVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPALIEKLKENIAILWKGLSNIQGLSISSNPK SPIVFLNLEKSTGSTKDDLKLLEAMADRALKEDSVFVVTTKRSTLDKCRLPVGIRLFVSAAHSDSDLLKACESLKRVAALVLMNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Potri.012G043800 [exp]	0	1	ATLCB1.3
AT5G38260			Protein kinase superfamily pro...		Potri.015G045000 [exp]	4.89	0.8486
AT1G23110			unknown protein		Potri.010G111300 [exp]	8.36	0.7927
AT1G18390			Protein kinase superfamily pro...		Potri.015G044750 [exp]	10.77	0.8363
AT5G63380			AMP-dependent synthetase and l...		Potri.012G094800 [exp]	20.00	0.8268
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048700 [exp]	20.49	0.8325
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Potri.001G177000 [exp]	22.58	0.8251
AT1G34300			lectin protein kinase family p...		Potri.013G115700 [exp]	24.06	0.8327
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.007G039800 [exp]	28.10	0.7731
AT3G63380			ATPase E1-E2 type family prote...		Potri.005G215600 [exp]	36.33	0.8093
AT1G34420			leucine-rich repeat transmembr...		Potri.013G114200 [exp]	40.48	0.8098

Compare expression of checked genes

Potri.012G043800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.