Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NCPGS.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37600 600 / 0 ATGLN1;1, GLN1;1, ATGSR1 ,GSR 1 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) AT1G66200 589 / 0 ATGSR2, GLN1;2 glutamine synthetase 1;2, glutamine synthase clone F11 (.1.2.3) AT3G17820 588 / 0 GLN1;3, GLN1.3, ATGSKB6 GLUTAMINE SYNTHETASE 1;3, ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE KB6, glutamine synthetase 1.3 (.1) AT5G16570 585 / 0 GLN1;4 glutamine synthetase 1;4 (.1) AT1G48470 551 / 0 GLN1;5 glutamine synthetase 1;5 (.1) AT5G35630 540 / 0 ATGSL1, GLN2, GS2 GLUTAMINE SYNTHETASE LIKE 1, glutamine synthetase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G034700 [exp] 637 / 0 AT5G37600 632 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Potri.007G069600 [exp] 607 / 0 AT5G37600 653 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Potri.017G131100 [exp] 603 / 0 AT1G66200 600 / 0.0 glutamine synthetase 1;2, glutamine synthase clone F11 (.1.2.3) Potri.004G085400 [exp] 598 / 0 AT1G66200 593 / 0.0 glutamine synthetase 1;2, glutamine synthase clone F11 (.1.2.3) Potri.005G093200 [exp] 595 / 0 AT1G66200 647 / 0.0 glutamine synthetase 1;2, glutamine synthase clone F11 (.1.2.3) Potri.010G029100 [exp] 543 / 0 AT5G35630 711 / 0.0 GLUTAMINE SYNTHETASE LIKE 1, glutamine synthetase 2 (.1.2.3) Potri.008G200100 [exp] 538 / 0 AT5G35630 704 / 0.0 GLUTAMINE SYNTHETASE LIKE 1, glutamine synthetase 2 (.1.2.3) Potri.017G127901 [exp] 103 / 8e-27 AT1G66200 106 / 2e-28 glutamine synthetase 1;2, glutamine synthase clone F11 (.1.2.3) Potri.017G138201 [exp] 0 / 1 AT1G66200 0 / 1 glutamine synthetase 1;2, glutamine synthase clone F11 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020812 [exp] 595 / 0 AT5G37600 672 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Lus10004037 [exp] 592 / 0 AT5G37600 671 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Lus10010203 [exp] 577 / 0 AT5G37600 655 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Lus10017404 [exp] 562 / 0 AT5G37600 642 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Lus10034016 [exp] 548 / 0 AT5G35630 748 / 0.0 GLUTAMINE SYNTHETASE LIKE 1, glutamine synthetase 2 (.1.2.3) Lus10001115 [exp] 545 / 0 AT5G35630 701 / 0.0 GLUTAMINE SYNTHETASE LIKE 1, glutamine synthetase 2 (.1.2.3) Lus10012536 [exp] 535 / 0 AT5G37600 599 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0286 [poplar] [flax] GCS PF00120 [poplar] [flax] Gln-synt_C Glutamine synthetase, catalytic domain CL0286 [poplar] [flax] PF03951 [poplar] [flax] Gln-synt_N Glutamine synthetase, beta-Grasp domain
Representative CDS sequence Show only first row Show all	>Potri.012G043900.1 pacid=42783124 polypeptide=Potri.012G043900.1.p locus=Potri.012G043900 ID=Potri.012G043900.1.v4.1 annot-version=v4.1 ATGTCTCTCTTGTCTGATCTCATCAACTTGGACCTCTCTGATACTACTGATAAGATCATTGCAGAATACATATGGATCGGTGGATCTGGTATGGATCTTA GAAGCAAAGCCAGGACACTTAATGGAGTAGTGAGTGATCCTCATAAGCTTCCAAAGTGGAACTATGACGGTTCAAGCACCGGCCAAGCTCCCGGAGAAGA CAGTGAAGTCATCTTATACCCACAAGCAATATTCAAGGACCCATTTAGGAGGGGCAACAACATCCTAGTGATGTGTGATGCTTACACTCCAGCAGGAGAG CCAATCCCAACTAACAAGAGATACAATGCAGCAAAAATTTTCAGCCATCCAGATGTTGTTGCTGAGGTGCCCTGGTATGGTATAGAGCAAGAGTACACCT TGTTGCAAAAAGATTTAAAATGGCCAATTGGGTGGCCTGTTGGTGGTTATCCTGGACCTCAGGGTCCTTACTACTGCGGTGCTGGTGCTGATAAGGCTTT TGGCCGTGATGTTGTTGACTCCCACTACAAGGCATGCCTTTATGCTGGAATCAACATTTCTGGCATCAACGGGGAAGTGATGCCTGGCCAATGGGAATTC CAAGTTGGCCCTTCTGTTGGCATCTCAGCTGGAGATGAGTTGTGGGTTGCCCGTTACATTCTTGAGAGGATCACAGAGATTGCTGGAGTGGTCGTTTCCT TTGACCCAAAACCTATCCCGGGAGACTGGAATGGAGCTGGTGCCCACACAAACTACAGTACCAAGTCCATGAGAAATGATGGAGGGTTTGAAGTTATCAA GAAGGCCATTGGAAAACTTCAATTGAAGCATAAGGAACACATTGCTGCTTACGGAGAAGGCAATGAGCGTCGTCTGACTGGTCGCCATGAAACAGCTGAC ATCAACACCTTCTCTTGGGGTGTGGCGAATCGTGGAGCTTCAGTTAGAGTTGGCAGGGATACAGAGAAAGCTGGGAAAGGTTACTTCGAAGACAGAAGGC CTGCTTCCAATATGGATCCTTATGTTGTCACCTCCATGATTGCAGACACGACCATTCTCTGGAAGCCATAA
AA sequence Show only first row Show all	>Potri.012G043900.1 pacid=42783124 polypeptide=Potri.012G043900.1.p locus=Potri.012G043900 ID=Potri.012G043900.1.v4.1 annot-version=v4.1 MSLLSDLINLDLSDTTDKIIAEYIWIGGSGMDLRSKARTLNGVVSDPHKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGE PIPTNKRYNAAKIFSHPDVVAEVPWYGIEQEYTLLQKDLKWPIGWPVGGYPGPQGPYYCGAGADKAFGRDVVDSHYKACLYAGINISGINGEVMPGQWEF QVGPSVGISAGDELWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMRNDGGFEVIKKAIGKLQLKHKEHIAAYGEGNERRLTGRHETAD INTFSWGVANRGASVRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Potri.012G043900 [exp]	0	1	NCPGS.6
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Potri.001G304800 [exp]	2.64	0.8947	CAM2
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Potri.015G034700 [exp]	3.16	0.8795	Pt-NCPGS.3
AT2G35680			Phosphotyrosine protein phosph...		Potri.014G045500 [exp]	3.46	0.8600
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Potri.005G209800 [exp]	8.71	0.8249
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Potri.014G095800 [exp]	9.94	0.8646
AT1G55530			RING/U-box superfamily protein...		Potri.013G060500 [exp]	10.24	0.8613
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Potri.003G122900 [exp]	10.48	0.8433
AT5G24760			GroES-like zinc-binding dehydr...		Potri.004G067000 [exp]	10.90	0.8524
AT4G32330			TPX2 (targeting protein for Xk...		Potri.018G027500 [exp]	13.67	0.8368
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Potri.010G125200 [exp]	13.85	0.8508	HMT4

Compare expression of checked genes

Potri.012G043900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.