Plant FIBer expression Database

Potri.012G044001 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67920 44 / 2e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G034800
[exp]
130 / 2e-41 AT1G67920 48 / 4e-09 unknown protein
Potri.010G107200
[exp]
54 / 2e-11 AT1G67920 62 / 1e-14 unknown protein
Potri.008G134100
[exp]
54 / 3e-11 AT1G67920 68 / 8e-17 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G044001.1 pacid=42783229 polypeptide=Potri.012G044001.1.p locus=Potri.012G044001 ID=Potri.012G044001.1.v4.1 annot-version=v4.1
ATGGAGCATAGAAGAGGAAACAGCAACAGCAACAAGAAGAAGGAAGATGGGGTTGTGGAGGAGCAAGTGGGATTTCCAGTTCATAATCAAGTGAAGAAGA
TAAAGCAAGAATCTTGTTACAAAATCTTGGATTGGTTACCGGCTGGGCAGCCTGAGATGAGACCTGTTGTTAGAGTGTTCACCGCCAGATCACATCAAGT
TTCTCGCTCTCCTCTGGGATTAGCAGGCAGGCCCATCTCCGTTGGGGATTCATAG
AA sequence
>Potri.012G044001.1 pacid=42783229 polypeptide=Potri.012G044001.1.p locus=Potri.012G044001 ID=Potri.012G044001.1.v4.1 annot-version=v4.1
MEHRRGNSNSNKKKEDGVVEEQVGFPVHNQVKKIKQESCYKILDWLPAGQPEMRPVVRVFTARSHQVSRSPLGLAGRPISVGDS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G67920 unknown protein Potri.012G044001
[exp]
0 1
AT5G65300 unknown protein Potri.005G072000
[exp]
18.22 0.9494
AT4G18540 unknown protein Potri.011G064300
[exp]
19.49 0.9708
AT4G27270 Quinone reductase family prote... Potri.011G129400
[exp]
23.74 0.9698 FQR1.2
AT3G61510 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCY... Potri.002G163700
[exp]
25.59 0.9690 Pt-ACS1.3
AT5G57510 unknown protein Potri.018G094100
[exp]
32.31 0.9679
AT2G39210 Major facilitator superfamily ... Potri.006G122400
[exp]
37.13 0.9675
Potri.011G112350
[exp]
39.79 0.9674
AT2G41380 S-adenosyl-L-methionine-depend... Potri.006G042200
[exp]
43.86 0.9665
AT5G46940 Plant invertase/pectin methyle... Potri.003G086500
[exp]
44.83 0.9669
AT4G15550 IAGLU indole-3-acetate beta-D-glucos... Potri.006G055600
[exp]
47.13 0.9665 Pt-ZOG1.15

Potri.012G044001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.