Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18300 199 / 3e-65 ATNUDT4 nudix hydrolase homolog 4 (.1) AT1G73540 169 / 3e-53 ATNUDT21 nudix hydrolase homolog 21 (.1) AT1G14860 168 / 3e-53 ATNUDT18 nudix hydrolase homolog 18 (.1) AT2G01670 163 / 3e-51 ATNUDT17 nudix hydrolase homolog 17 (.1) AT3G26690 134 / 1e-39 ATNUDX13, ATNUDT13 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, nudix hydrolase homolog 13 (.1.2) AT1G12880 134 / 2e-39 ATNUDT12 nudix hydrolase homolog 12 (.1) AT3G12600 131 / 1e-38 ATNUDT16 nudix hydrolase homolog 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G035000 [exp] 294 / 1e-101 AT1G18300 195 / 2e-62 nudix hydrolase homolog 4 (.1) Potri.017G131000 [exp] 176 / 3e-56 AT2G01670 223 / 6e-75 nudix hydrolase homolog 17 (.1) Potri.010G107300 [exp] 175 / 7e-56 AT2G01670 223 / 2e-75 nudix hydrolase homolog 17 (.1) Potri.004G085600 [exp] 173 / 6e-55 AT1G14860 206 / 2e-68 nudix hydrolase homolog 18 (.1) Potri.008G134000 [exp] 171 / 2e-54 AT2G01670 218 / 3e-73 nudix hydrolase homolog 17 (.1) Potri.003G194900 [exp] 129 / 6e-38 AT3G12600 226 / 2e-76 nudix hydrolase homolog 16 (.1.2) Potri.001G029500 [exp] 128 / 1e-37 AT3G12600 219 / 5e-74 nudix hydrolase homolog 16 (.1.2) Potri.001G069200 [exp] 118 / 7e-34 AT1G12880 219 / 2e-73 nudix hydrolase homolog 12 (.1) Potri.003G161100 [exp] 117 / 1e-32 AT1G12880 213 / 4e-70 nudix hydrolase homolog 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021780 [exp] 175 / 1e-55 AT1G14860 244 / 2e-83 nudix hydrolase homolog 18 (.1) Lus10034598 [exp] 174 / 3e-55 AT1G14860 248 / 5e-85 nudix hydrolase homolog 18 (.1) Lus10001598 [exp] 174 / 3e-55 AT1G14860 252 / 1e-86 nudix hydrolase homolog 18 (.1) Lus10003713 [exp] 145 / 6e-44 AT1G14860 213 / 8e-71 nudix hydrolase homolog 18 (.1) Lus10008660 [exp] 139 / 3e-41 AT3G12600 221 / 6e-74 nudix hydrolase homolog 16 (.1.2) Lus10026164 [exp] 137 / 3e-41 AT3G12600 221 / 1e-74 nudix hydrolase homolog 16 (.1.2) Lus10024137 [exp] 118 / 8e-34 AT3G12600 211 / 1e-70 nudix hydrolase homolog 16 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Potri.012G044300.2 pacid=42782598 polypeptide=Potri.012G044300.2.p locus=Potri.012G044300 ID=Potri.012G044300.2.v4.1 annot-version=v4.1 ATGAGGTGCTTTTCTTTCTATCTCACAAACTTAACAAATCTCCTCAACTTTCTTTTCCCATTTCTTATTAAAATCCCATCAAAGTGTTTGCCTGTGCAAA TTGAGAATATGGTCGCTTTGGTTTCTCGTACTGGCAGACATCTTCAACGTTATGAGAAAGGCTATCGCCTTGTTGTAGGGTGCATTCCATATAGATACAA GAAATCACAGGAACCAACTTCAGTTGAAGATTTAGAAGTCCTTGTCATTAGTGCGCAAAATGGTCAAGGAATGTTGTTCCCAAAGGGAGGATGGGAAAAT GATGAATGTATGGAAGAGGCAGCGAAGCGAGAGACGGAGGAGGAAGCAGGAGTTATTGGTGTTGTTCAGGATAAATTAGGCCCATGGCATTACAAGAGCA AAAGGAGTTGCATAATGCATGAGAGCTACATGTTTCCTCTGCTTGTTAAAAAAGAATTAGACTGTTGGCCGGAGAAAAATATCCGAAAACGAAGATGGGT TTCTATTAATGAAGCTAGAGAAGTTTGCCATAATTGGTGGATGCGAGAAGCTTTAGAAGAATTATTTAGGCAACAAAGTCGAAATCTCCAAGCACAAAGT TAG
AA sequence Show only first row Show all	>Potri.012G044300.2 pacid=42782598 polypeptide=Potri.012G044300.2.p locus=Potri.012G044300 ID=Potri.012G044300.2.v4.1 annot-version=v4.1 MRCFSFYLTNLTNLLNFLFPFLIKIPSKCLPVQIENMVALVSRTGRHLQRYEKGYRLVVGCIPYRYKKSQEPTSVEDLEVLVISAQNGQGMLFPKGGWEN DECMEEAAKRETEEEAGVIGVVQDKLGPWHYKSKRSCIMHESYMFPLLVKKELDCWPEKNIRKRRWVSINEAREVCHNWWMREALEELFRQQSRNLQAQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18300		ATNUDT4	nudix hydrolase homolog 4 (.1)		Potri.012G044300 [exp]	0	1
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.017G124700 [exp]	8.48	0.8678	Pt-HBGGPPS2.3
AT1G18350		ATMKK7, BUD1	MAP KINASE KINASE7, BUSHY AND ...		Potri.010G049500 [exp]	8.71	0.8786
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Potri.008G130100 [exp]	10.90	0.8580
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Potri.010G112000 [exp]	12.84	0.8518
AT5G38770		ATGDU7	glutamine dumper 7 (.1)		Potri.004G108440 [exp]	13.56	0.8642
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.014G080000 [exp]	15.00	0.8146
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Potri.006G037100 [exp]	16.58	0.8396
					Potri.017G045266 [exp]	16.73	0.8197
					Potri.012G054000 [exp]	17.88	0.8619
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.016G031850 [exp]	21.35	0.8606

Compare expression of checked genes

Potri.012G044300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.