Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 764 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 730 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 728 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 722 / 0 EFR EF-TU receptor (.1) AT3G47110 707 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 441 / 2e-138 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 401 / 5e-122 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 387 / 2e-116 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G39390 361 / 6e-114 Leucine-rich repeat protein kinase family protein (.1) AT3G49670 362 / 5e-109 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G037400 [exp] 1118 / 0 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 856 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 846 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 843 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 842 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 836 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 827 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 813 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 808 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011386 [exp] 778 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004827 [exp] 776 / 0 AT3G47570 812 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 773 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 773 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 750 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 743 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 738 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 734 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 733 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 723 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G044500.1 pacid=42784215 polypeptide=Potri.012G044500.1.p locus=Potri.012G044500 ID=Potri.012G044500.1.v4.1 annot-version=v4.1 ATGATTTCAAGGCTACTAAACTCGTTCCTTTTTATCTTGTGTGCCCTTTGTTCCATCAACTACTTCGAGAACCCCACGGCCTCTGGCTTCACAAATGAAA CAGACCGAGAAGCTTTGCTAGCCATGAAGCATCTCGTCTTAAGCGATCCTTTCAGAGCTTTGAGCTCATGGAATGCCTCGCTGCATTTCTGTACTTGGCA TGGTGTTGCATGCGGTTCCAAACATCAAAGAGTGATTGCTCTGAATCTTTCATCACTGCAACTGGCAGGTTTCTTGTCTCCCCACATAGGGAACCTTACC TTCCTTAGGAGAATCGATCTCAGTAAGAACAACTTTCATGGAACAATTCCAGAAGAAGTCGGACAGCTGTTTCGCCTACAATACCTCTCTCTCTCAAATA ACTCTTTCCAGGATGAACTTCCGGGAAATCTAAGCCATTGTTCAAATTTGAGATTCTTGGGTATGGAGGGAAACAACCTTACAGGGAAAATTCCTAGCGA GCTGGGATCTTTGTCTAATCTAAGAGCACCTGGCCTCCTCAAAAATCATTTGACAGGTTCACTCCCTCGTTCATTTGGGAATCTCTCTAGTCTCGTCTCA CTTTCTCTGAGAGAGAACAATCTTGAAGGAAGCATACCTATTGAATTTGAACGCCTGTCCAGGTTAGCATATCTTGACTTATCCTTCAACAATTTGTCAG GTATGGTTCCGGAAGAGCTTTACAATATCTCATCCTTAAGCACTGTTGCCATGGTCTCTAACAATTTAAGTGGTCGCCTCCCCCTTGATTTAGGCTTGAC ACTTCCCAATCTCCAAACTCTGTATCTCGGACTAAACCGGTTCCTCGGACCTGTTCCAGCATCCATAGTTAATTCCTCGGGACTTGAATACCTTGATTTA GCTTCTAATTCCTTTTCAGGGCCAGTGCCAAAGAATTTAGGAAGCCTACGTTATCTTCAAATCCTGAATTTTGGTTTTAACAAAATTGGTGATAAGAATA ACAATGACTTGACTTTTCTCACCTCCTTAACCAACTGTACCGATCTAAAAGAGATCGGGCTTTACAAAAGTAACCTTGGAGGTTTATTGCCAAACTCCAT AGCAAATCTCTCGACCAATCTCTATTACTTGGTAATGTGGGGCAACTACATCACTGGAACCATTCCTACCAAGATTGGAAATCTTAAAAGCTCGCAGGCT CTTGATTTGGCTGATAACATGCTCACGGGAAGATTACCTGAATCTATTGGGAAGCTAGTCATGTTAAAAGAGTTCTACGTTCACTTGAATAAAATCTCGG GGGAAATTCCATCCGCTTTGGGAAACATTTCTGGATTACTTAAACTAGATTTGGGAGTGAATCTTCTCGAGGGAACCATACCTGTTTCTTTGGCTAATTG CACAAGCTTAAATCTTTTGGACATTTCACACAATCACCTTAGCGGGTTCATACCTGAAAAGATCTTTAGTCTTTCTTCCCTCACGCTTGGCCTTCTTTTA GGATCAAATAGATTAAGTGGACGATTGCCAAGTCAAGTGGTTAACATGAGAAATCTCATTCAATTGGATATTTCAAGAAATAAAATATGTGGAGAAATCC CAAGTACTCTAGAGACTTGTCTCATGTTAGAGACTCTCAACATGAGTGGTAATTTCCTCAGGGGCACTATTCCTTCCTCTTTCAAGAAACTAAGAAGTAT TCGAGTCCTAGACGTTTCCTGCAATAATTTGTCTGGGCAGATTCCAGAGTTTCTTGCTGATTTGCCATTCCTTTCTAATCTAAACCTGTCCTTTAACGAG TTCGAGGGCAAAGTGCCAGCTGAAGGAGCTTTCGAGAATGCTAGCCAATTTTCCATTGCTGGAAATAACAAGCTATGTGGAGGAATCAAGGCGATTCAAT TGCCTGAATGTCCAAGAACGAAACAACACAAGCGTTTCTCAAAGAGAGTAGTGATCATTGCAAGCAGTGTTGCTGTCTTCATTACTTTGCTTCTAGCATG TATTTTTGCTGTTGGATACAGGAAACTATCAGCCAATAGGAAACCCCTTTCAGCTTCAACCATGGAGAAGAAGTTCCAAATAGTTTCCTATCAAGACCTT GCTCGTGCCACTGATGGGTTCTCTTCTGCCAATATGATTGGTGATGGAGGATATGGCTCTGTCTACAAAGGAATTCTCGGTCCTGATGGTCAAACCGTCG CCATAAAGGTGCTCAAACCTGAACAGCGAGGAGCCAACCGTACTTTTGTGGCTGAATGTGAAACATTAAGGCGCATCAGGCATCGGAATCTTGTTAAAAT TGTCACTGCTTGCTCGAGTATTGATTTCAAAGGCAATGACTTCAAAGCTTTGGTATTTGATTTTATGCCCGGTGGAAGTTTGGAGAGCTGGTTGCATCCA AGTACAGTGGAGTCACAAAACTCGAAAAGATTGAGTCTACTGCAAAGGATTAGCATGTTGATCGATGTGGCATCGGCATTTGATTATCTTCACAACCATT GTGATGAACAAATTGTCCACTGTGATCTCAAACCAAGCAACATCCTTCTTGACAATGACCTTACAGCTCATGTGGGTGATTTTGGCCTTGCAAGGATTCT TTCTGCAGCCACAGGAGAAACCCCTTCAACATCGACCAGCTCACTTGGCGTAAGAGGAACTGTTGGATATGTGGCACCAGAATATGGTATGGGTGGACAG GTTTCAATAAGTGGTGATGTGTATAGCTATGGCATCCTCCTTCTGGAGATGTTTACAGGAAAGAGACCCACCGACAGCATGTTCACGGGCAACAATAGCC TCCATAATTTCGCTAAAACAGCTCTTCCTGATCAAGTATCAGAGATCATCGATCCTCTGCTTAAAATTGATACCCAACAGCTAGCCGAGTCGAGCAGAAA TGGTCCCAGTAGCAGTAGGGACAAGATAGAGGGCTGTTTGATATCAATCTTACAAATTGGTGTCCTATGTTCTGTTGAGCTTCCAAGTGAACGAATGGTC ATAGCAGAAGTTCTCTCTGAATTTAATAAAATTAGGAAAATTCTCTGCAGCAAGTAG
AA sequence Show only first row Show all	>Potri.012G044500.1 pacid=42784215 polypeptide=Potri.012G044500.1.p locus=Potri.012G044500 ID=Potri.012G044500.1.v4.1 annot-version=v4.1 MISRLLNSFLFILCALCSINYFENPTASGFTNETDREALLAMKHLVLSDPFRALSSWNASLHFCTWHGVACGSKHQRVIALNLSSLQLAGFLSPHIGNLT FLRRIDLSKNNFHGTIPEEVGQLFRLQYLSLSNNSFQDELPGNLSHCSNLRFLGMEGNNLTGKIPSELGSLSNLRAPGLLKNHLTGSLPRSFGNLSSLVS LSLRENNLEGSIPIEFERLSRLAYLDLSFNNLSGMVPEELYNISSLSTVAMVSNNLSGRLPLDLGLTLPNLQTLYLGLNRFLGPVPASIVNSSGLEYLDL ASNSFSGPVPKNLGSLRYLQILNFGFNKIGDKNNNDLTFLTSLTNCTDLKEIGLYKSNLGGLLPNSIANLSTNLYYLVMWGNYITGTIPTKIGNLKSSQA LDLADNMLTGRLPESIGKLVMLKEFYVHLNKISGEIPSALGNISGLLKLDLGVNLLEGTIPVSLANCTSLNLLDISHNHLSGFIPEKIFSLSSLTLGLLL GSNRLSGRLPSQVVNMRNLIQLDISRNKICGEIPSTLETCLMLETLNMSGNFLRGTIPSSFKKLRSIRVLDVSCNNLSGQIPEFLADLPFLSNLNLSFNE FEGKVPAEGAFENASQFSIAGNNKLCGGIKAIQLPECPRTKQHKRFSKRVVIIASSVAVFITLLLACIFAVGYRKLSANRKPLSASTMEKKFQIVSYQDL ARATDGFSSANMIGDGGYGSVYKGILGPDGQTVAIKVLKPEQRGANRTFVAECETLRRIRHRNLVKIVTACSSIDFKGNDFKALVFDFMPGGSLESWLHP STVESQNSKRLSLLQRISMLIDVASAFDYLHNHCDEQIVHCDLKPSNILLDNDLTAHVGDFGLARILSAATGETPSTSTSSLGVRGTVGYVAPEYGMGGQ VSISGDVYSYGILLLEMFTGKRPTDSMFTGNNSLHNFAKTALPDQVSEIIDPLLKIDTQQLAESSRNGPSSSRDKIEGCLISILQIGVLCSVELPSERMV IAEVLSEFNKIRKILCSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.012G044500 [exp]	0	1
AT5G26330			Cupredoxin superfamily protein...		Potri.006G259101 [exp]	2.00	0.6890
ATCG00630		ATCG00630.1, PS...	PSAJ (.1)		Potri.003G067501 [exp]	16.43	0.6899
					Potri.001G015450 [exp]	24.97	0.6226
ATCG01040		ATCG01040.1, YC...	Cytochrome C assembly protein ...		Potri.001G342966 [exp]	33.67	0.6834
ATCG00380		ATCG00380.1, RP...	chloroplast ribosomal protein ...		Potri.013G163300 [exp]	34.78	0.6867
ATCG00720		ATCG00720.1, PE...	photosynthetic electron transf...		Potri.011G074700 [exp]	37.81	0.6542
ATCG00720		ATCG00720.1, PE...	photosynthetic electron transf...		Potri.007G062202 [exp]	39.68	0.6678
ATCG00640		ATCG00640.1, RP...	ribosomal protein L33 (.1)		Potri.003G067400 [exp]	41.23	0.6563
ATCG00430		ATCG00430.1, PS...	photosystem II reaction center...		Potri.013G163100 [exp]	47.07	0.6715
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Potri.005G098700 [exp]	49.35	0.5864

Compare expression of checked genes

Potri.012G044500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.