Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48480 720 / 0 RKL1 receptor-like kinase 1 (.1) AT3G17840 708 / 0 RLK902 receptor-like kinase 902 (.1) AT5G16590 597 / 0 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT5G58300 496 / 3e-168 Leucine-rich repeat protein kinase family protein (.1.2) AT1G68400 424 / 5e-140 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G02880 398 / 2e-130 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 381 / 1e-123 Leucine-rich repeat protein kinase family protein (.1) AT4G23740 353 / 5e-113 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 343 / 3e-109 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 328 / 1e-103 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G035500 [exp] 996 / 0 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.017G130600 [exp] 694 / 0 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.004G086100 [exp] 691 / 0 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 392 / 4e-128 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 391 / 1e-127 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 390 / 2e-127 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 369 / 4e-119 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 370 / 8e-119 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.015G023500 [exp] 354 / 2e-113 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017996 [exp] 796 / 0 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1) Lus10031337 [exp] 736 / 0 AT1G48480 771 / 0.0 receptor-like kinase 1 (.1) Lus10031350 [exp] 606 / 0 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10002299 [exp] 497 / 1e-173 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10004040 [exp] 494 / 6e-168 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1) Lus10031909 [exp] 472 / 4e-162 AT1G48480 441 / 2e-150 receptor-like kinase 1 (.1) Lus10041992 [exp] 414 / 2e-142 AT3G17840 343 / 2e-115 receptor-like kinase 902 (.1) Lus10010973 [exp] 422 / 3e-140 AT1G48480 621 / 0.0 receptor-like kinase 1 (.1) Lus10017756 [exp] 393 / 4e-128 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035012 [exp] 377 / 3e-122 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G044600.1 pacid=42783396 polypeptide=Potri.012G044600.1.p locus=Potri.012G044600 ID=Potri.012G044600.1.v4.1 annot-version=v4.1 ATGGAGACCAAATGTCTCCTCCCTTTTCACCTCTTTCTGTTACTACTCTCTCTACCTCTTTCAAAACCAGATCTCTCTGCCGACCATTCAGCCCTACTCA CTCTCCGTTCCGCTGTACTTGGCCGAACCCTTCTCTGGAACACCTCACTTCCGACCCCTTGTTCGTGGACTGGTGTCTTATGTGAGCAAAACCGTGTCAC AGTGCTACGGCTTCCTGGTTTTGCACTCACAGGAGAAATCCCACTTGGGATCTTCTCAAACTTGACAGAATTGCGCACTTTGAGTCTTAGACTTAATGCA CTCTCTGGAAAGCTTCCTCAAGATCTTGCTAACTGTAAAAGTTTGAGAAATCTTTATTTACAAGGGAATCTTTTTTCTGGAGAGATACCTGATTTCTTGT TTGGTTTGAAGGATCTTGTGAGGTTGAACCTTGGTGAGAATAGTTTTACTGGCGAGATTTCAACCGGGTTTGGTAATTTTATCAGGTTAAGGACTTTGTT TTTAGAGGACAATTCGTTATCTGGATCTTTGCCAGATTTGAAACTGGAAAAGTTAGAGCAGTTTAATGTGAGTAATAATTTGCTAAATGGGTCTATACCT GATAGATTTAAGGGTTTTGGGATTAGTTCTTTTGGGGGTACTTCTTTATGTGGGAAGCCTCTTCCTGGTTGTGATGGTGTTCCTAGGAGTATTGTGGTGC CTAGTAGGCCAAATGGGGGTGGAGAAGGTAAGAGGAAGAAGTTGTCTGGCGGTGCAATTGCAGGGATTGTGATTGGATCTATAATGGGGTTATTGTTGAT TTTAATGATTTTGATGTTTTTGTGTAGAAAGAAGAGTAGTAGTAAGTCAAGATCAATTGACATTGCGTCGGTTAAGCAACAAGAGATGGAGATTCAAGTG GGGAAGCCAATTGTGGAGGTGGAAAATGGTGGTGGGTATTCTGTGGCTGCCGCTGCGGCGGCTGCAATGGTGGGTAATGGTAAAGGTGGGGATTTGAATA GTGGTGATGGTAAAAAGTTGGTGTTTTTCGGCAAGGCTTCAAGGGTGTTTGATTTGGAGGATTTATTAAGAGCTTCGGCAGAGGTTTTGGGAAAAGGTAC ATTTGGGACAGCCTATAAGGCGGTTTTGGAGATGGGGACTGTGGTAGCTGTAAAGAGGTTGAAGGATGTGACAATTTCCGAGAGAGAATTTAGGGAGAAG ATTGAGACTGTGGGTGCTATGGATCATGAGAATTTGGTCCCATTGAGAGCTTACTATTATAGTGGAGATGAGAAGCTTCTTGTTTATGATTACATGTCAA TGGGAAGCTTGTCTGCACTTTTGCATGGGAACAGGGGAGCTGGTAGGACTCCATTGAACTGGGAAATCAGGTCTGGCATTGCCCTTGGAGCTGCTCGTGG CATTGAATACCTTCACTCTCAAGGTCCCAATGTTTCTCATGGAAACATCAAGTCATCCAATATCCTTCTCACTCAATCATATGATGCCCGAGTATCTGAT TTTGGCCTTGCCCGCCTTGTTGGTCCTCCCTCCACTCCTAACCGAGTTGCTGGATACCGAGCACCAGAGGTAACTGACCCTGGCAAGGTTTCCCAGAAGG CTGATGTCTATAGCTTTGGTGTATTGCTGTTGGAGCTGCTGACTGGGAAGGCCCCCACCCATGCCCTTTTGAACGAGGAGGGTGTAGACCTTCCCAGATG GGTTCAGTCTATAGTTCGAGAGGAATGGACTTCAGAGGTGTTCGATCTTGAGCTCCTCAGATACCAAAATGTTGAGGAAGAGATGGTTCAGCTCTTGCAG CTTGGAATAGACTGTGCCGCCCAGTACCCCGACAATCGTCCTTCAATGTCTGAAGTAACAAGGAGGATCGATGAGCTATGTCGGTCTAGTCTGCGGGAAG ACTCACAGCCTGAACCACACAATGATGCATCAGACGATATGTCCTCTTGA
AA sequence Show only first row Show all	>Potri.012G044600.1 pacid=42783396 polypeptide=Potri.012G044600.1.p locus=Potri.012G044600 ID=Potri.012G044600.1.v4.1 annot-version=v4.1 METKCLLPFHLFLLLLSLPLSKPDLSADHSALLTLRSAVLGRTLLWNTSLPTPCSWTGVLCEQNRVTVLRLPGFALTGEIPLGIFSNLTELRTLSLRLNA LSGKLPQDLANCKSLRNLYLQGNLFSGEIPDFLFGLKDLVRLNLGENSFTGEISTGFGNFIRLRTLFLEDNSLSGSLPDLKLEKLEQFNVSNNLLNGSIP DRFKGFGISSFGGTSLCGKPLPGCDGVPRSIVVPSRPNGGGEGKRKKLSGGAIAGIVIGSIMGLLLILMILMFLCRKKSSSKSRSIDIASVKQQEMEIQV GKPIVEVENGGGYSVAAAAAAAMVGNGKGGDLNSGDGKKLVFFGKASRVFDLEDLLRASAEVLGKGTFGTAYKAVLEMGTVVAVKRLKDVTISEREFREK IETVGAMDHENLVPLRAYYYSGDEKLLVYDYMSMGSLSALLHGNRGAGRTPLNWEIRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTQSYDARVSD FGLARLVGPPSTPNRVAGYRAPEVTDPGKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSIVREEWTSEVFDLELLRYQNVEEEMVQLLQ LGIDCAAQYPDNRPSMSEVTRRIDELCRSSLREDSQPEPHNDASDDMSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Potri.012G044600 [exp]	0	1
AT3G63430			unknown protein		Potri.002G046700 [exp]	4.12	0.7963
AT4G14490	FHA		SMAD/FHA domain-containing pro...		Potri.010G074900 [exp]	7.21	0.8280
AT1G11125			unknown protein		Potri.011G045700 [exp]	7.28	0.8305
AT4G39790			Protein of unknown function (D...		Potri.005G077700 [exp]	7.68	0.7654
AT3G55420			unknown protein		Potri.010G203900 [exp]	10.19	0.8136
AT3G09070			Protein of unknown function (D...		Potri.006G096600 [exp]	16.91	0.7900
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.008G185500 [exp]	16.97	0.8054
AT1G30690			Sec14p-like phosphatidylinosit...		Potri.001G461400 [exp]	29.08	0.8078
AT5G39420		CDC2CAT	CDC2C (.1)		Potri.017G088200 [exp]	30.16	0.8097
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Potri.010G025300 [exp]	31.41	0.7724

Compare expression of checked genes

Potri.012G044600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.