Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17850 1531 / 0 Protein kinase superfamily protein (.1) AT1G48490 1394 / 0 Protein kinase superfamily protein (.1.2.3) AT5G62310 1021 / 0 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G45160 643 / 0 Protein kinase superfamily protein (.1.2) AT3G23310 281 / 3e-82 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G14350 280 / 5e-82 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT1G30640 280 / 5e-82 Protein kinase family protein (.1) AT4G33080 274 / 3e-80 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT2G20470 270 / 2e-78 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT2G19400 267 / 1e-77 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G035600 [exp] 2110 / 0 AT3G17850 1543 / 0.0 Protein kinase superfamily protein (.1) Potri.015G129200 [exp] 1052 / 0 AT5G62310 1359 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.012G127800 [exp] 1046 / 0 AT5G62310 1318 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G263000 [exp] 699 / 0 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G167800 [exp] 278 / 3e-81 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.011G157000 [exp] 275 / 4e-80 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.010G070600 [exp] 271 / 5e-79 AT4G14350 894 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.005G226700 [exp] 271 / 1e-78 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.006G146900 [exp] 269 / 4e-78 AT2G19400 755 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031332 [exp] 1666 / 0 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10031906 [exp] 1436 / 0 AT1G48490 1358 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10038912 [exp] 816 / 0 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10027196 [exp] 814 / 0 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10005470 [exp] 681 / 0 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10011814 [exp] 280 / 2e-82 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10021176 [exp] 280 / 2e-82 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10033911 [exp] 275 / 5e-80 AT2G20470 831 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10003541 [exp] 272 / 4e-79 AT2G20470 850 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10042650 [exp] 264 / 1e-76 AT5G09890 857 / 0.0 Protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.012G044700.1 pacid=42783241 polypeptide=Potri.012G044750.1.p locus=Potri.012G044700 ID=Potri.012G044700.1.v4.1 annot-version=v4.1 ATGGTGTTCAAGAACAAGCTATTTTTCTCATCTTCAAAGAAATCAGAGACTTCAAGTCCTGATGGATCCAACAACAGTCCAAGATCAATCGGGTCAAATT CACCGATCCGGTCCGAGAAGAAAAAACCCGCCAAATCTAAAGATTCAACACCTACTACTCCAGCTAGCACTGCTTCTTCTAATAATTCTACTTGCAAGCA AACCCAAGTTAAAGATGGGGTAAAAAAGAAAGACTCATTTTTTAAAGGCAAAGAAACTGTGAGCCAACCTCGAACTCCTACCAAACCAGGGATTTCAAAT TCTGGGTCGGATTTAAAATCCAAAAAAGGTGGTGTCTTGGTTGATAATAAGGAGAAAGAAGCAGAAAAGTATTCTGTTTCGCCGATTTTAGCTTCATCTT TGGGGTTGAATAGGATCAAAACAAGATCAGGGCCATTGCCACAAGAGACTTTCTTTAGTTTTAAAGGTGATAAAGGGAGTGGTGTATTGGGGTCTAGTAA TTTGTCAAGGCCTAGTGCTAGTAGTGGGGATGGGGGGTCGAGTTCGAATTCAAGTTCTTTAGGGTCAGGAAAGAAGAAGGAAGGAATATTGGGGCAGAGT AAGTTGAGGGTGTTTCAAGAGAGTGGTAACGGAGGTGATAATTCGGATAGTATGTCTACTGGAAGTGGAGGACAGTCTAGAGAAGTTAGTCCGAATTTGC AGGCAAGAACTAGGTTGCAAAGTGGAGAGTCATCAAGCGAAGCAGGTCAACATAATTCATCACGGGGTCACTCTGGAGGCTTACGAAGTTCTGATGCTAT CACACCTGAGACTTATGATTGTGAAAACCCAAAGGAATCTGAATCTCCCAGGTTTCAAGCAATACTCCGTTTGACAAGTGCCCCTAGAAAGAGGTTTCCT GCTGACATAAAAAGTTTCTCACATGAATTAAATTCCAAAGGTGTACGGCCTTTCCCATTTTGGAAGCCTCGAGGGCTAAATAACTTGGAGGAAATCTTGG TTGTCATACGTGCAAAATTTGACAAAGCAAAGGAAGAAGTGAATTCTGACCTGGCTATCTTTGCAGCGGATCTGGTTGGAATTCTTGAAAAAAATGCGGA TAGTCATCCTGAGTGGCAGGAAACTATTGAAGACTTGTTGGTTTTGGCTCGGAGTTGCGCTATGACATCACCTGGAGAGTTTTGGCTTCAGTGTGAAGTT ATAGTCCAAGAACTGGATGATAGACGCCAAGAACTTCCCCCAGGAATTTTGAAGCAACTTCATACCCGAATGCTTTTCATCCTAACAAGGTGTACCAGAT TATTGCAATTCCACAAGGAAAGGGTGCTGGATGAGAATGAAAATGTTTTCGGGCTTCGTCAATCTAGGCTTTTGCATCCTGTAGATAAACGAATTCCTTC TTTTGTTGGTAGGGATGGGAAAGTTTCTAGTGCTGCAAAGAAGGCAGCTTCAGGAAGGAAATCATATAGTCAAGAGCATAAGGCTGCATTAGTAAGAAAA TCATACAGTCAAGAGCAGCGTGATTGGAGCAGAGAACAAGATATACTGCCAGGAAAACTGCTCTCTCTTGCTGATAACGCTCTTAAGAGTGACGAGTCTC CCACAGGCAGGGATCGGATATCTTCTTGGAAGCCACTCCCATCTCCTCCTGGCAAAAGCACAAAGGAAGTTGTTCCTGTAGAGGAGCAGAATGACAGTAA GATTGAACCTTTGAAAACTTCAAATGACAGGAGAGGAGCCTCTGACGTGCATCTGGCTGCTGCAAAGGTTTCTGACCTTCCAATGGTGAAAGATGTGCAT GAAAATTCTACGAAGCACCAACCTAAAATTTCTTGGGGAAACTGGGGCGATCAGCAGAATATTGCTGATGAGAGTTCAATAATTTGTCGCATTTGTGAGG AGGAAGTTCCGACTTTACATGTAGAAGATCATTTAAGAATTTGTGCAATTGCAGATCGATGTGATCAGAAGGGTCTAAGTGTCAACGAGCGCTTGATCAG AATTTCCGAAACACTTGAGAAGATGATAGTCCAGAAGGATATTCATCATGCAGTGGGAAGCCCAGACGTTGCTAAAGTATCAAATTCTAGTGTGACTGAA GAATCTGATGTTCTCTCTCCAAAACTCAGTGATTGGTCTCATAGAGGGTCAGAGGACATGCTTGACTGCTTCCCTGAAGCTGACAATGCTGTTTTTATGG ATGACCTGAAAGGGTTGCCTTCCATGTCATGTAAAACCCGATTTGGTCCCAAGTCTGATCAAGGAATGGCCACATCATCAGCTGGTAGCATGACTCCTAG ATCTCCATTATTGACACCAAAGACCAGTCATATAGACTTGCTTTTAGCAGGGAAGAGTGCTTTTTCCGAGCATGATGATCTTCCTCAGCTGAATGAACTT GCCGATATTGCAAGATGTGTAGCAACTACACCTCTAGAGGATGATCGCTCCACTCCCTATTTGCTAACTTGTCTTGGAGACTTGAGGGTTGTCATTGAGC GGAGAAAGTTTGATGCGCTTACTGTGGAGACTTTTGGAACAAGAATTGAGAAGCTTATTCGGGAGAAATATTTGCAGCTTTGCGAGCTAGTGGAAGATGA GAAGGTTGATATAGCAAGTACTGTAATTCATGAAGATACACCTTTGGAAGATGATGTTGTTCGAAGCTTGAGAACAAGTCCAATACATTCTTCTAAGGAT CGTACCTCCATAGATGACTTCGAGATAATAAAACCAATAAGTCGTGGGGCATTTGGAAGGGTGTTTTTAGCTAAAAAGAGAGCAACAGGAGACCTTTTTG CCATAAAGGTTCTTAAAAAGGCTGATATGATCCGCAAGAATGCTGTTGAAAGTATACTAGCAGAACGAGATATTTTAATTTCAGTCCGCAATCCCTTTGT GGTTCGCTTCTTCTATTCATTTACTTGTCGTGAGAATTTGTATCTTGTGATGGAGTATTTGAATGGTGGCGATCTGTATTCATTGTTGAGAAATTTGGGC TGCTTAGATGAAGATGTTGCTCGTGTATACATTGCAGAAGTTGTGCTCGCTTTGGAATATTTGCACTCACTGCGTGTAGTTCATCGTGATTTGAAGCCAG ATAATTTGTTGATTGCACATGATGGACATATCAAGCTGACAGACTTTGGTCTTTCCAAGGTTGGTCTCATCAATAGCACCGATGATTTATCTGGTCCAGC AGTTAGCGGGACTTCCATGCTTGTGGATGATGAACCTCAACTATCTACTTCCGAGCATCAGCGAGAAAGGCGGAAAAAACGTTCTGCTGTGGGCACACCT GATTATCTTGCACCAGAGATTCTTCTGGGAACAGGACATGGAACAACTGCTGATTGGTGGTCTGTGGGTGTTATTTTATTTGAATTGATTGTTGGTATTC CACCCTTTAATGCAGAGCATCCCCAGACGATATTTGATAATATTCTCAACTGTAAGATACCTTGGCCACGGGTGCCTGAGGAAATGAGTCCTGAAGCACA GGATCTAATTGATAGATTATTAACTGAAGATCCTTACCAGAGACTTGGAGCTGGAGGAGCATCAGAGGTAAAGCAGCATGTATTCTTTAAAGATATCAAC TGGGACACACTTGCCAGGCAAAAGGCTGCATTTGTGCCCAGTTCAGAGAGTGCACTTGATACAAGCTACTTCACTAGTCGATACTCTTGGAATACTTCAG ATGATGCAATATACCCAGCCAGTGACTTTGAGGATTCGAGTGATGCAGATAGCTTGAGTGGCAGCAGTAGCTGCTTAAGCAATCGCCATGATGAAGTGGG AGATGAATGTCAAGGTCTTGCTGAATTTGAGTCTGGTTCAGGTGTCAATTACTCCTTCAGTAATTTTTCATTCAAGAATCTCTCCCAGCTTGCATCAATC AACTATGATATTCTCTCTAAGGGTTGGAAGGATGATCCACCAACAACTAATTTATGA
AA sequence Show only first row Show all	>Potri.012G044700.1 pacid=42783241 polypeptide=Potri.012G044750.1.p locus=Potri.012G044700 ID=Potri.012G044700.1.v4.1 annot-version=v4.1 MVFKNKLFFSSSKKSETSSPDGSNNSPRSIGSNSPIRSEKKKPAKSKDSTPTTPASTASSNNSTCKQTQVKDGVKKKDSFFKGKETVSQPRTPTKPGISN SGSDLKSKKGGVLVDNKEKEAEKYSVSPILASSLGLNRIKTRSGPLPQETFFSFKGDKGSGVLGSSNLSRPSASSGDGGSSSNSSSLGSGKKKEGILGQS KLRVFQESGNGGDNSDSMSTGSGGQSREVSPNLQARTRLQSGESSSEAGQHNSSRGHSGGLRSSDAITPETYDCENPKESESPRFQAILRLTSAPRKRFP ADIKSFSHELNSKGVRPFPFWKPRGLNNLEEILVVIRAKFDKAKEEVNSDLAIFAADLVGILEKNADSHPEWQETIEDLLVLARSCAMTSPGEFWLQCEV IVQELDDRRQELPPGILKQLHTRMLFILTRCTRLLQFHKERVLDENENVFGLRQSRLLHPVDKRIPSFVGRDGKVSSAAKKAASGRKSYSQEHKAALVRK SYSQEQRDWSREQDILPGKLLSLADNALKSDESPTGRDRISSWKPLPSPPGKSTKEVVPVEEQNDSKIEPLKTSNDRRGASDVHLAAAKVSDLPMVKDVH ENSTKHQPKISWGNWGDQQNIADESSIICRICEEEVPTLHVEDHLRICAIADRCDQKGLSVNERLIRISETLEKMIVQKDIHHAVGSPDVAKVSNSSVTE ESDVLSPKLSDWSHRGSEDMLDCFPEADNAVFMDDLKGLPSMSCKTRFGPKSDQGMATSSAGSMTPRSPLLTPKTSHIDLLLAGKSAFSEHDDLPQLNEL ADIARCVATTPLEDDRSTPYLLTCLGDLRVVIERRKFDALTVETFGTRIEKLIREKYLQLCELVEDEKVDIASTVIHEDTPLEDDVVRSLRTSPIHSSKD RTSIDDFEIIKPISRGAFGRVFLAKKRATGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLG CLDEDVARVYIAEVVLALEYLHSLRVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTSMLVDDEPQLSTSEHQRERRKKRSAVGTP DYLAPEILLGTGHGTTADWWSVGVILFELIVGIPPFNAEHPQTIFDNILNCKIPWPRVPEEMSPEAQDLIDRLLTEDPYQRLGAGGASEVKQHVFFKDIN WDTLARQKAAFVPSSESALDTSYFTSRYSWNTSDDAIYPASDFEDSSDADSLSGSSSCLSNRHDEVGDECQGLAEFESGSGVNYSFSNFSFKNLSQLASI NYDILSKGWKDDPPTTNL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17850			Protein kinase superfamily pro...		Potri.012G044700 [exp]	0	1
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.014G084500 [exp]	6.32	0.7956
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Potri.007G070100 [exp]	7.34	0.8164
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.002G110500 [exp]	8.00	0.8107
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Potri.001G115100 [exp]	8.48	0.7715	Pt-PAK.2
AT3G17850			Protein kinase superfamily pro...		Potri.015G035600 [exp]	10.90	0.7840
					Potri.017G058800 [exp]	11.31	0.7159
AT5G18525			protein serine/threonine kinas...		Potri.010G153300 [exp]	14.49	0.7551
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.007G081900 [exp]	19.59	0.7852
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Potri.006G127100 [exp]	20.73	0.7723
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.001G437500 [exp]	26.98	0.7035

Compare expression of checked genes

Potri.012G044700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.