Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17860 234 / 4e-74 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT1G48500 175 / 1e-51 ZIM TIFY6A, JAZ4 TIFY DOMAIN PROTEIN 6A, jasmonate-zim-domain protein 4 (.1.2.3) AT1G70700 85 / 1e-18 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT1G19180 63 / 2e-11 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2) AT1G74950 61 / 3e-10 ZIM TIFY10B, JAZ2 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) AT3G43440 54 / 3e-08 ZIM TIFY3A, JAZ11 jasmonate-zim-domain protein 11 (.1.2) AT1G17380 50 / 1e-06 ZIM TIFY11A, JAZ5 jasmonate-zim-domain protein 5 (.1) AT5G20900 47 / 4e-06 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 12 (.1) AT4G14720 47 / 2e-05 ZIM TIFY4B, PPD2 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) AT5G13220 45 / 2e-05 ZIM JAS1, TIFY9, JAZ10, AT5G13220 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G035800 [exp] 599 / 0 AT3G17860 219 / 5e-68 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.008G133400 [exp] 229 / 2e-72 AT3G17860 169 / 1e-49 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.010G108200 [exp] 218 / 1e-67 AT3G17860 180 / 7e-54 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.006G139400 [exp] 63 / 5e-11 AT1G19180 184 / 2e-57 jasmonate-zim-domain protein 1 (.1.2) Potri.003G068900 [exp] 63 / 6e-11 AT1G72450 129 / 4e-36 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) Potri.001G166200 [exp] 59 / 1e-09 AT1G19180 112 / 1e-29 jasmonate-zim-domain protein 1 (.1.2) Potri.005G214300 [exp] 50 / 2e-06 AT4G14720 153 / 1e-43 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Potri.018G047100 [exp] 47 / 7e-06 AT5G20900 122 / 6e-35 jasmonate-zim-domain protein 12 (.1) Potri.018G033700 [exp] 48 / 8e-06 AT4G32570 191 / 9e-57 TIFY domain protein 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017991 [exp] 259 / 9e-83 AT3G17860 189 / 3e-56 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10041986 [exp] 249 / 1e-79 AT3G17860 174 / 4e-51 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10031333 [exp] 209 / 2e-63 AT3G17860 155 / 8e-44 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10031907 [exp] 190 / 1e-53 AT3G17910 378 / 5e-125 SURFEIT 1, EMBRYO DEFECTIVE 3121, Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1) Lus10039911 [exp] 72 / 7e-14 AT1G19180 161 / 3e-48 jasmonate-zim-domain protein 1 (.1.2) Lus10027648 [exp] 69 / 5e-13 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2) Lus10008101 [exp] 48 / 8e-06 AT4G32570 155 / 2e-43 TIFY domain protein 8 (.1) Lus10013138 [exp] 48 / 8e-06 AT4G32570 152 / 2e-42 TIFY domain protein 8 (.1) Lus10008129 [exp] 47 / 1e-05 AT1G74950 114 / 1e-30 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10013166 [exp] 46 / 2e-05 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06200 [poplar] [flax] tify tify domain CL0281 [poplar] [flax] CCT PF09425 [poplar] [flax] Jas_motif Jas motif
Representative CDS sequence Show only first row Show all	>Potri.012G044900.3 pacid=42784148 polypeptide=Potri.012G044900.3.p locus=Potri.012G044900 ID=Potri.012G044900.3.v4.1 annot-version=v4.1 ATGGAGAGAGATTTCCTAGGTCTGGGTACGATAAATAATCCTCTTACAATCAAAGAAGCGACCACTGATACTCCCAACAAGGATTCTGTAGCCATGAGAG GTTCAGGGATGCAGTGGTCTTTTTCAAACAAGGTTTCTGCCATTCCTCAATTCTTGTCATTCAAGTCTTCTCTGGAAGATAAACCAAGAAAGGCTGTTCA TGATCCTGTAGCATCTTCCTCTGGCCTTATGTCTATTTCAACTGCTGATGCTTTTGATTCTAACCAGAAAACATACTCTGGCTTGGTTCAGAAAAACATG GCTATTGATAAACAAGCTGGAAACCATTATCCTGTGACAACCTATGGTACACAGCAGTTCGATGCCTACTCTGTTAATCGGCCACAGGATACGAGGATGT TCTCAATCTCCGGCCAACAAAATCAAACAATCACCGTTTCTATGAGCTCCCCCATCCTGCAGTCCCATTTTCCTCCCACAGGACATAATATGCTTTCTAA TTCAATAGTCCCAAAACCTCTGGGAGGAGTTCCAGTCATAACCCCTACATCTGCTCTTCCCACTCTGAGTTCGATCATTGGCACCACTGATCTTAGGGAT GGTACTAAATCCTCTGGAGCACCTGCTCAGTTGACCATATTCTATGCTGGTTCAGTGTGCGTGTATGATGATGTTTCTCCTGAGAAGGCTCAGGCCATTA TGTTTTTGGCTGGAAACGGTGGGTCTTCTGGAACGCCGAACAAGCCAATCTCTACACCTCAAGCACAGGCACCAATTCGTAGACCACCTGTCAGCGATAT TTTTGCTGGGAACAAAAGCAACACTACAGCTCCAATCTCATGCATTCCCAGCCCTATTTCTGTGACCTCTAGTAACACCAACGATTTAGCAACAGTTAAG CCAGTAGTATCTTTAGCTTCTTCTGTTAAACAAACAGAGCCCCCCAAACCACTTAATTCACCAGGGCCTACTTCTGCCACGCTTGTTCCAGCAGTGGCTG TACCTCAGGCTCGTAAAGCATCGTTGGCTCGGTTTCTGGAGAAGCGCAAGGAAAGGGTGACGCAAACTTCGCCATATAATGTAAGCAAGAGGTCTCCCGA GAGTGGTTCCCATGGATGTGATGGTGCAAGTTTATCTATGAATTTCTCTAGCTCTTACCCTCTCCCAGCCAGCAACTAG
AA sequence Show only first row Show all	>Potri.012G044900.3 pacid=42784148 polypeptide=Potri.012G044900.3.p locus=Potri.012G044900 ID=Potri.012G044900.3.v4.1 annot-version=v4.1 MERDFLGLGTINNPLTIKEATTDTPNKDSVAMRGSGMQWSFSNKVSAIPQFLSFKSSLEDKPRKAVHDPVASSSGLMSISTADAFDSNQKTYSGLVQKNM AIDKQAGNHYPVTTYGTQQFDAYSVNRPQDTRMFSISGQQNQTITVSMSSPILQSHFPPTGHNMLSNSIVPKPLGGVPVITPTSALPTLSSIIGTTDLRD GTKSSGAPAQLTIFYAGSVCVYDDVSPEKAQAIMFLAGNGGSSGTPNKPISTPQAQAPIRRPPVSDIFAGNKSNTTAPISCIPSPISVTSSNTNDLATVK PVVSLASSVKQTEPPKPLNSPGPTSATLVPAVAVPQARKASLARFLEKRKERVTQTSPYNVSKRSPESGSHGCDGASLSMNFSSSYPLPASN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.012G044900 [exp]	0	1
AT4G16490			ARM repeat superfamily protein...		Potri.006G015100 [exp]	1.73	0.9619
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Potri.015G085300 [exp]	3.31	0.9649
AT3G18950			Transducin/WD40 repeat-like su...		Potri.004G148400 [exp]	4.47	0.9634
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Potri.007G006800 [exp]	6.16	0.9238	Pt-PSK3.1
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Potri.002G168200 [exp]	6.32	0.9222
AT2G01410			NHL domain-containing protein ...		Potri.006G111600 [exp]	6.70	0.9180
AT4G04610		1-Apr, PRH19, A...	PAPS REDUCTASE HOMOLOG 19, APS...		Potri.004G012100 [exp]	6.70	0.9555
AT4G21990		3-Apr, PRH-26, ...	PAPS REDUCTASE HOMOLOG 26, APS...		Potri.004G011525 [exp]	6.92	0.9572
AT1G56600		ATGOLS2	galactinol synthase 2 (.1)		Potri.013G005900 [exp]	9.53	0.9535
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Potri.001G439600 [exp]	9.79	0.9134

Compare expression of checked genes

Potri.012G044900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.