Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATTDX.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17880 378 / 7e-131 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) AT4G22670 215 / 1e-66 ATHIP1, TPR11 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) AT3G51030 124 / 3e-35 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) AT1G19730 113 / 4e-31 ATTRX4, ATH4 thioredoxin H-type 4, Thioredoxin superfamily protein (.1) AT1G45145 110 / 8e-30 LIV1, ATTRX5, ATH5 LOCUS OF INSENSITIVITY TO VICTORIN 1, thioredoxin H-type 5 (.1) AT3G08710 107 / 2e-28 TRXH9, ATH9 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) AT5G42980 107 / 2e-28 ATTRXH3, ATTRX3, ATH3 THIOREDOXIN H3, thioredoxin H-type 3, thioredoxin 3 (.1) AT1G59730 99 / 1e-25 ATH7 thioredoxin H-type 7 (.1) AT5G39950 99 / 3e-25 ATTRXH2, ATTRX2, ATH2 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) AT1G69880 96 / 8e-24 ATH8 thioredoxin H-type 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G036000 [exp] 468 / 2e-166 AT3G17880 396 / 3e-137 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.003G114000 [exp] 222 / 1e-69 AT4G22670 335 / 5e-112 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Potri.001G118900 [exp] 221 / 3e-69 AT4G22670 333 / 3e-111 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Potri.005G232700 [exp] 123 / 6e-35 AT3G51030 162 / 5e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.007G018000 [exp] 120 / 2e-33 AT3G51030 186 / 2e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.002G030000 [exp] 119 / 2e-33 AT3G51030 160 / 3e-52 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.006G110100 [exp] 112 / 2e-30 AT3G08710 178 / 1e-58 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.016G138800 [exp] 106 / 4e-28 AT3G08710 208 / 1e-70 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.017G076700 [exp] 104 / 3e-27 AT5G39950 168 / 7e-55 Arabidopsis thioredoxin h2, thioredoxin 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032227 [exp] 219 / 5e-68 AT4G22670 403 / 2e-138 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Lus10031334 [exp] 214 / 2e-66 AT3G17880 456 / 3e-160 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Lus10024590 [exp] 210 / 1e-64 AT4G22670 394 / 9e-135 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Lus10024293 [exp] 124 / 6e-35 AT3G51030 162 / 4e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10014277 [exp] 121 / 5e-34 AT3G51030 185 / 4e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10000802 [exp] 121 / 7e-34 AT3G51030 165 / 5e-54 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10028349 [exp] 116 / 4e-32 AT3G51030 179 / 1e-59 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10041799 [exp] 115 / 1e-31 AT3G51030 182 / 8e-61 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10014186 [exp] 113 / 1e-30 AT3G08710 192 / 3e-64 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Lus10022727 [exp] 111 / 8e-30 AT3G08710 189 / 6e-63 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.012G045000.2 pacid=42782560 polypeptide=Potri.012G045000.2.p locus=Potri.012G045000 ID=Potri.012G045000.2.v4.1 annot-version=v4.1 ATGTCTGACTCTGGGGAATGCTATGATTCCAAAAGACCAATTGAAGATGATGATGATGATATTGTTGAGTCTGATATTGACTTGGATAATACTGATGTTG TGGAACCTGATAATGATCCTCCACAAAAGATGGGAGATCCTGCAGTTGAAGTTACAGAAGAAAAGCGGGATGCTGCTCAAACTGAAAAGGCAAAAGCTAT GGATGCAATTTCTGAAGGTAACCTGGATGAAGCCATAGATCATTTAACAGAAGCCATCATGTTGAATCCAATTTCAGCTATATTATATGCCACGCGAGCT AGTGTCTTTGTTAAACTGAAGAAACCTCATGCTGCAATTCGTGACGCTGATGCTGCTCTGGCAATCAATCCAGACTCTGCAAAAGGATATAAAGTACGAG GTATGGCCAGAGCCATGTTAGGCCAATGGGAACAAGCAGCAAGTGAGCTGCAAATGGCATCAAAGTTGGATTATGATGATGAGATTGGTTCAGTGCTGAA AAAGGTTGAACCTAATGCACGCAAAATTGAAGAGCATCGCATAAAATATGAACGCCTGCAGAAAGAAAGGGAGCTAAGGAAAGCTGAACGTGAAAGAAAA CAAGAAGCTGAACCCCAAGAAAGAGAAGCCTTATCTGCTCTGAATGAAGGGCAAGTTATAGGCATTCATTCTGCTAGGGAACTAGATCCCAAACTAAATG CTGCATCAAAAACTTCTCGCCTTGCAATCTTGTACTTCACGGCAACATGGTGTGGGCCATGTCGTATGATTTCTCCCATTTTCACAAGCTTAGCTGCAAA GTACCCGAAAGTTGTTTTCTTGAAAGTTGACATAGACGAGGCAAGGGATGTTGCTTCAAGCTGGAATATCAGCAGTGTTCCTACCTTCTACTTTACAAAG AATGGCAAGGAGATTGACAAGGTTGTGGGGGCTGATAAAAATGGACTGGAAAGGAAAATTGAACAACATGCAGGCTAG
AA sequence Show only first row Show all	>Potri.012G045000.2 pacid=42782560 polypeptide=Potri.012G045000.2.p locus=Potri.012G045000 ID=Potri.012G045000.2.v4.1 annot-version=v4.1 MSDSGECYDSKRPIEDDDDDIVESDIDLDNTDVVEPDNDPPQKMGDPAVEVTEEKRDAAQTEKAKAMDAISEGNLDEAIDHLTEAIMLNPISAILYATRA SVFVKLKKPHAAIRDADAALAINPDSAKGYKVRGMARAMLGQWEQAASELQMASKLDYDDEIGSVLKKVEPNARKIEEHRIKYERLQKERELRKAERERK QEAEPQEREALSALNEGQVIGIHSARELDPKLNAASKTSRLAILYFTATWCGPCRMISPIFTSLAAKYPKVVFLKVDIDEARDVASSWNISSVPTFYFTK NGKEIDKVVGADKNGLERKIEQHAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Potri.012G045000 [exp]	0	1	Pt-ATTDX.1
AT1G55790			Domain of unknown function (DU...		Potri.006G002700 [exp]	4.24	0.8304
					Potri.006G059400 [exp]	8.36	0.8110
AT5G02570			Histone superfamily protein (....		Potri.017G123700 [exp]	8.48	0.8033	HTB903
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Potri.019G038184 [exp]	10.77	0.8289
					Potri.005G150300 [exp]	11.04	0.7452
AT4G01410			Late embryogenesis abundant (L...		Potri.002G180000 [exp]	11.40	0.8332
AT1G02780		EMB2386	embryo defective 2386, Ribosom...		Potri.004G078000 [exp]	13.49	0.7900	Pt-RPL19.3
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Potri.015G036000 [exp]	14.45	0.7829	ATTDX.2
					Potri.008G108801 [exp]	14.89	0.7252
AT5G36930			Disease resistance protein (TI...		Potri.005G003900 [exp]	19.33	0.7805

Compare expression of checked genes

Potri.012G045000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.